C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051442 Pcdhb16-201 ENSMUSG00000047910 10090 + 18:37477768-37483035 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051442
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051442 1.131±0.64 1.300±0.10 0.472±0.02 0.571±0.14 0.932±0.37 0.483±0.15 0.367±0.01 0.539±0.12 0.066±0.06 2.205±0.48 0.109±0.03 1.987±1.19 0.027±0.04 0.066±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000R CGP 18:37473546-37483035
CIL_00062S CIL_00062S_000T CGP 18:37477768-37488289

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007416 TAS synapse assembly
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000239444 PCDHB8-001 protein_coding Homo_sapiens 0 1772
ENST00000341948 PCDHB13-001 protein_coding Homo_sapiens 0 1729
ENST00000524813 PCDHB18-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 819
ENST00000526308 PCDHB18-002 processed_transcript Homo_sapiens 0 819

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