C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GRB10 interacting GYF protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048000 Gigyf2 10090 + 1:87326998-87450796 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027475 Gigyf2-001 87327003-87450796 protein_coding
  ENSMUST00000164992 Gigyf2-005 87327033-87425187 protein_coding
  ENSMUST00000172736 Gigyf2-020 87403726-87407701 protein_coding
  ENSMUST00000172776 Gigyf2-018 87420211-87421866 retained_intron
  ENSMUST00000172794 Gigyf2-002 87327029-87449145 protein_coding
  ENSMUST00000172964 Gigyf2-006 87354446-87449145 nonsense_mediated_decay
  ENSMUST00000172976 Gigyf2-015 87364161-87365655 retained_intron
  ENSMUST00000173148 Gigyf2-023 87404948-87410702 nonsense_mediated_decay
  ENSMUST00000173152 Gigyf2-021 87404916-87407611 protein_coding
  ENSMUST00000173173 Gigyf2-009 87327066-87433799 protein_coding
  ENSMUST00000173235 Gigyf2-013 87403667-87442020 nonsense_mediated_decay
  ENSMUST00000173636 Gigyf2-019 87407379-87420342 protein_coding
  ENSMUST00000173663 Gigyf2-022 87404964-87407366 protein_coding
  ENSMUST00000173850 Gigyf2-010 87327048-87390883 processed_transcript
  ENSMUST00000174334 Gigyf2-004 87386338-87407043 protein_coding
  ENSMUST00000174482 Gigyf2-017 87443328-87449208 retained_intron
  ENSMUST00000174501 Gigyf2-014 87354446-87449145 protein_coding
  ENSMUST00000174535 Gigyf2-003 87386317-87407312 processed_transcript
  ENSMUST00000174583 Gigyf2-012 87327030-87357784 processed_transcript
  ENSMUST00000174605 Gigyf2-016 87363802-87379002 retained_intron
  ENSMUST00000174671 Gigyf2-007 87433120-87450796 processed_transcript
  ENSMUST00000174846 Gigyf2-011 87326998-87355722 processed_transcript
  ENSMUST00000187038 Gigyf2-024 87327046-87329007 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027475ENSMUST00000164992ENSMUST00000172736ENSMUST00000172794ENSMUST00000173152ENSMUST00000173173ENSMUST00000174501ENSMUST00000174583ENSMUST00000174671
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027475 N/A 3.006±0.83 4.787±1.33 N/A 1.606±0.25 0.800±0.00 1.874±0.10 3.130±1.83 1.404±0.00 4.617±0.79 10.204±2.45 16.343±10.23 2.812±0.00
ENSMUST00000164992 2.359±0.00 N/A N/A 2.634±0.00 5.102±0.00 2.547±0.76 6.231±1.86 2.449±0.38 3.549±0.67 N/A 6.755±0.03 N/A N/A
ENSMUST00000172736 N/A N/A 26.555±0.00 N/A N/A N/A N/A N/A N/A N/A 38.712±0.00 N/A N/A
ENSMUST00000172794 N/A N/A 5.493±0.00 N/A N/A N/A N/A N/A N/A N/A 10.242±0.00 18.487±3.65 N/A
ENSMUST00000173152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 105.273±0.00
ENSMUST00000173173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.665±0.00 N/A 11.875±0.00
ENSMUST00000174501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.343±0.00
ENSMUST00000174583 N/A N/A 6.279±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174671 2.132±0.07 8.142±1.05 11.789±0.32 4.080±1.92 5.976±2.56 2.652±1.09 8.470±5.22 4.975±2.02 3.328±0.00 N/A 6.537±1.41 12.758±0.58 7.004±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HW CIL_0003HW_0002 CGP 1:87264363-87450796
CIL_0003HP CIL_0003HP_0002 CGP 1:87326998-87450796

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0007631 IMP feeding behavior
GO:0008344 IMP adult locomotory behavior
GO:0009791 IMP post-embryonic development
GO:0016020 IEA membrane
GO:0017148 IEA negative regulation of translation
GO:0021522 IMP spinal cord motor neuron differentiation
GO:0031571 IMP mitotic G1 DNA damage checkpoint
GO:0035264 IMP multicellular organism growth
GO:0044267 IMP cellular protein metabolic process
GO:0044822 IEA poly(A) RNA binding
GO:0048009 IMP insulin-like growth factor receptor signaling pathway
GO:0048873 IMP homeostasis of number of cells within a tissue
GO:0050881 IMP musculoskeletal movement
GO:0050885 IMP neuromuscular process controlling balance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009735 gigfy2 GRB10 interacting GYF protein 2 protein_coding Danio_rerio
ENSG00000204120 GIGYF2 GRB10 interacting GYF protein 2 protein_coding Homo_sapiens

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