C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scratch homolog 1, zinc finger protein (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000096365 Scrt1-201 ENSMUSG00000048385 10090 - 15:76516203-76522129 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000096365
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000096365 0.242±0.07 0.017±0.00 25.012±5.78 0.048±0.01 0.027±0.00 0.007±0.00 0.017±0.00 0.017±0.00 0.020±0.00 0.024±0.01 8.306±3.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0002 VISTA 15:76102685-76704351
CIL_00026R CIL_00026R_0002 CGP 15:76502015-76522129

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:2001222 IMP regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000246104 SCRT2-001 protein_coding Homo_sapiens 0 477
ENST00000569446 SCRT1-001 protein_coding Homo_sapiens 0 2545

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