C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox B3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048763 Hoxb3 10090 + 11:96323326-96347930 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055334 Hoxb3-001 96343769-96346507 protein_coding
  ENSMUST00000093944 Hoxb3-002 96323326-96347930 protein_coding
  ENSMUST00000123091 Hoxb3-003 96328062-96344303 protein_coding
  ENSMUST00000143462 Hoxb3-004 96340945-96341774 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverMuscleOvaryPlacentaTestisENSMUST00000055334ENSMUST00000093944
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000055334 11.220±0.48 N/A 0.366±0.34 3.650±0.00 3.245±0.00 0.185±0.00 0.245±0.14 N/A 2.536±0.48 0.079±0.00 N/A
ENSMUST00000093944 N/A 1.405±0.00 0.401±0.00 N/A N/A 0.078±0.00 0.106±0.04 0.148±0.00 0.963±0.05 0.156±0.11 0.333±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0001525 IEA angiogenesis
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0021546 IDA rhombomere development
GO:0021615 IGI glossopharyngeal nerve morphogenesis
GO:0030878 IGI thyroid gland development
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0050767 IDA regulation of neurogenesis
GO:0051216 IGI cartilage development
GO:0060216 IGI definitive hemopoiesis
GO:0060324 IDA face development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029263 hoxb3a homeo box B3a protein_coding Danio_rerio
ENSG00000120093 HOXB3 homeobox B3 protein_coding Homo_sapiens

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