C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055334 Hoxb3-001 ENSMUSG00000048763 10090 + 11:96343769-96346507 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverOvaryPlacentaENSMUST00000055334
Transcript ID Adrenal Brain Breast Colon Heart Liver Ovary Placenta
ENSMUST00000055334 11.220±0.48 0.366±0.34 3.650±0.00 3.245±0.00 0.185±0.00 0.245±0.14 2.536±0.48 0.079±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0021546 IDA rhombomere development
GO:0021615 IGI glossopharyngeal nerve morphogenesis
GO:0030878 IGI thyroid gland development
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0050767 IDA regulation of neurogenesis
GO:0051216 IGI cartilage development
GO:0060216 IGI definitive hemopoiesis
GO:0060324 IDA face development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222726 HOXA5-001 protein_coding Homo_sapiens 0.00000005 64
ENST00000222728 HOXA6-001 protein_coding Homo_sapiens 1e-27 128
ENST00000239151 HOXB5-001 protein_coding Homo_sapiens 4e-20 104
ENST00000242159 HOXA7-001 protein_coding Homo_sapiens 5e-24 117
ENST00000249440 HOXD3-001 protein_coding Homo_sapiens 0 252
ENST00000267176 SBNO1-001 protein_coding Homo_sapiens 0.00006 57
ENST00000306324 HOXD4-001 protein_coding Homo_sapiens 0.000000003 68
ENST00000311626 HOXB3-007 protein_coding Homo_sapiens 0 1949
ENST00000317201 HOXA3-002 protein_coding Homo_sapiens 0 287
ENST00000332503 HOXB4-001 protein_coding Homo_sapiens 7e-20 104
ENST00000360046 HOXA4-001 protein_coding Homo_sapiens 5e-18 97
ENST00000396352 HOXA3-001 protein_coding Homo_sapiens 0 287
ENST00000410016 HOXD3-004 protein_coding Homo_sapiens 0 252
ENST00000428284 HOXA4-201 protein_coding Homo_sapiens 5e-18 97
ENST00000460160 HOXB3-006 protein_coding Homo_sapiens 0 1260
ENST00000468418 HOXD3-001 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000470495 HOXB3-001 protein_coding Homo_sapiens 0 2082
ENST00000471459 HOXB3-012 protein_coding Homo_sapiens 0 520
ENST00000472863 HOXB3-003 protein_coding Homo_sapiens 0 1620
ENST00000476342 HOXB3-004 protein_coding Homo_sapiens 0 1770
ENST00000489475 HOXB3-005 protein_coding Homo_sapiens 0 1620
ENST00000490677 HOXB3-008 protein_coding Homo_sapiens 0 1153
ENST00000498678 HOXB3-002 protein_coding Homo_sapiens 0 1949
ENST00000511914 HOXA4-004 protein_coding Homo_sapiens 3e-18 97
ENST00000520854 HOXA5-002 processed_transcript Homo_sapiens 0.000000009 64
ENST00000521478 HOXA6-002 processed_transcript Homo_sapiens 8e-28 128
ENST00000523796 HOXA7-003 processed_transcript Homo_sapiens 1e-24 117
ENST00000602398 SBNO1-002 protein_coding Homo_sapiens 0.00002 57
ENST00000610970 HOXA4-202 protein_coding Homo_sapiens 5e-18 97
ENST00000612286 HOXA3-201 protein_coding Homo_sapiens 0 287

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