C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PHD finger protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048874 Phf3 10090 - 1:30802339-30873921 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000088310 Phf3-201 30802342-30863256 protein_coding
  ENSMUST00000185521 Phf3-011 30829431-30830743 retained_intron
  ENSMUST00000185604 Phf3-013 30872652-30873475 retained_intron
  ENSMUST00000186105 Phf3-002 30813571-30873695 retained_intron
  ENSMUST00000186733 Phf3-003 30802339-30873581 protein_coding
  ENSMUST00000187316 Phf3-005 30811904-30813535 retained_intron
  ENSMUST00000187600 Phf3-008 30824416-30863070 processed_transcript
  ENSMUST00000187968 Phf3-012 30863070-30873252 protein_coding
  ENSMUST00000188780 Phf3-007 30831205-30873894 protein_coding
  ENSMUST00000188847 Phf3-004 30821058-30823843 retained_intron
  ENSMUST00000190190 Phf3-009 30806205-30809105 retained_intron
  ENSMUST00000191064 Phf3-006 30820226-30873804 nonsense_mediated_decay
  ENSMUST00000191245 Phf3-001 30815315-30873921 retained_intron
  ENSMUST00000191329 Phf3-010 30803546-30810712 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088310ENSMUST00000186733ENSMUST00000188780ENSMUST00000191329
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088310 2.216±1.46 3.328±0.63 4.656±0.45 5.638±0.83 2.961±1.82 3.069±0.57 1.268±0.31 1.346±0.13 2.864±1.98 2.449±1.58 2.311±0.18 4.641±3.57 6.214±1.85 1.720±0.76
ENSMUST00000186733 N/A 3.280±0.62 N/A N/A 0.509±0.00 1.987±0.00 0.475±0.00 0.963±0.00 1.059±0.53 0.759±0.00 N/A 4.721±3.18 6.308±4.10 N/A
ENSMUST00000188780 8.447±0.77 19.166±4.90 N/A N/A 20.532±8.92 23.141±3.14 N/A 8.710±0.00 4.210±1.50 13.739±7.75 N/A 25.636±5.15 N/A 3.364±0.00
ENSMUST00000191329 1.354±0.00 N/A 4.534±0.08 15.798±0.00 3.540±0.00 N/A 1.134±0.13 N/A 4.063±2.15 N/A 2.171±0.31 14.108±9.29 11.774±4.91 4.696±5.06

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034768 phf3 PHD finger protein 3 protein_coding Danio_rerio
ENSG00000118482 PHF3 PHD finger protein 3 protein_coding Homo_sapiens

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