C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H2A histone family, member X
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052686 H2afx-001 ENSMUSG00000049932 10090 + 9:44334694-44336077 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052686
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052686 27.171±14.38 32.078±4.35 11.915±1.62 71.798±48.34 23.893±12.50 48.130±5.34 5.452±0.63 10.852±1.60 85.544±87.79 15.408±1.16 4.196±0.88 75.686±34.15 65.963±37.09 40.496±19.56

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000077 IEA DNA damage checkpoint
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0000781 IEA chromosome, telomeric region
GO:0000785 IDA chromatin
GO:0000786 IEA nucleosome
GO:0000790 IDA nuclear chromatin
GO:0000794 IDA condensed nuclear chromosome
GO:0001673 IDA male germ cell nucleus
GO:0001741 IDA XY body
GO:0003684 IDA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005634 ISO nucleus
GO:0005654 TAS nucleoplasm
GO:0005657 IDA replication fork
GO:0005694 IDA chromosome
GO:0006281 IMP DNA repair
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007283 IMP spermatogenesis
GO:0019899 IEA enzyme binding
GO:0035861 IDA site of double-strand break
GO:0042393 IEA histone binding
GO:0046982 IEA protein heterodimerization activity
GO:0051321 IEA meiotic cell cycle
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000129969 si:ch211-113a14.19-001 protein_coding Danio_rerio 0 315
ENSDART00000110632 protein_coding Danio_rerio 0 309
ENSDART00000103013 si:ch211-113a14.19-001 protein_coding Danio_rerio 0 303
ENSDART00000102972 protein_coding Danio_rerio 0 302
ENSDART00000155501 protein_coding Danio_rerio 0 302
ENSDART00000103006 protein_coding Danio_rerio 0 300
ENSDART00000129239 protein_coding Danio_rerio 0 298
ENSDART00000099859 protein_coding Danio_rerio 0 292
ENSDART00000147978 protein_coding Danio_rerio 0 291
ENSDART00000115109 protein_coding Danio_rerio 0 289
ENSDART00000126259 protein_coding Danio_rerio 0 287
ENSDART00000129403 protein_coding Danio_rerio 0 285
ENSDART00000073454 protein_coding Danio_rerio 0 281
ENSDART00000073402 protein_coding Danio_rerio 0 276
ENSDART00000108936 protein_coding Danio_rerio 0 272
ENSDART00000155060 protein_coding Danio_rerio 0 272
ENSDART00000114908 protein_coding Danio_rerio 0 259
ENST00000314088 HIST1H2AC-001 nonsense_mediated_decay Homo_sapiens 0 401
ENST00000331380 HIST2H2AC-001 protein_coding Homo_sapiens 0 392
ENST00000333151 HIST1H2AJ-001 protein_coding Homo_sapiens 0 398
ENST00000341023 HIST1H2AD-001 protein_coding Homo_sapiens 0 385
ENST00000358739 HIST1H2AI-001 protein_coding Homo_sapiens 0 411
ENST00000359193 HIST1H2AG-001 protein_coding Homo_sapiens 0 411
ENST00000359611 HIST1H2AM-001 protein_coding Homo_sapiens 0 385
ENST00000366695 HIST3H2A-001 protein_coding Homo_sapiens 0 460
ENST00000369159 HIST2H2AA4-001 protein_coding Homo_sapiens 0 401
ENST00000375167 H2AFX-002 nonsense_mediated_decay Homo_sapiens 0 739
ENST00000377459 HIST1H2AH-001 protein_coding Homo_sapiens 0 379
ENST00000377791 HIST1H2AC-201 protein_coding Homo_sapiens 0 401
ENST00000389078 H2AFJ-005 nonsense_mediated_decay Homo_sapiens 0 379
ENST00000406683 HIST1H2APS1-001 processed_pseudogene Homo_sapiens 0 204
ENST00000479986 HIST1H3J-002 processed_transcript Homo_sapiens 0 340
ENST00000501744 H2AFJ-002 nonsense_mediated_decay Homo_sapiens 0 305
ENST00000530167 H2AFX-001 protein_coding Homo_sapiens 0 739
ENST00000544848 H2AFJ-001 protein_coding Homo_sapiens 0 379
ENST00000602637 HIST1H2AC-002 protein_coding Homo_sapiens 0 401
ENST00000607355 HIST2H2AA4-001 protein_coding Homo_sapiens 0 401
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 392
ENST00000613174 HIST1H2AL-001 protein_coding Homo_sapiens 0 418
ENST00000618958 HIST1H2AK-001 protein_coding Homo_sapiens 0 392

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