C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Smad nuclear interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052183 Snip1-001 ENSMUSG00000050213 10090 + 4:125066672-125074042 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052183
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052183 4.491±1.78 5.146±0.77 6.411±0.58 5.586±2.45 5.176±2.06 5.992±0.64 2.001±0.68 4.263±0.71 5.786±2.33 5.933±0.44 2.034±0.32 8.259±1.44 9.354±3.14 9.201±2.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JP CIL_0002JP_0003 CGP 4:125055338-125074042

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007249 IDA I-kappaB kinase/NF-kappaB signaling
GO:0035196 ISS production of miRNAs involved in gene silencing by miRNA
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296215 SNIP1-001 protein_coding Homo_sapiens 0 1005

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