Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info
Description:	protocadherin beta 9
Gene Accession	Gene Name	Tax ID	Strand	Position	Gene Biotype
ENSMUSG00000051242	Pcdhb9	10090	+	18:37400855-37403909	protein_coding
	Transcript Accession		Transcript Name	Position	Transcript Biotype
	ENSMUST00000057228		Pcdhb9-201	37400855-37403909	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENSMUST00000057228	4.728±3.68	0.563±0.12	0.767±0.03	1.955±0.45	1.336±0.50	0.754±0.20	0.230±0.03	0.354±0.05	0.033±0.02	5.066±1.39	0.054±0.02	5.661±2.08	0.062±0.10	0.119±0.11

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_00062S	CIL_00062S_000O	CGP	18:37355271-37403909
CIL_00062S	CIL_00062S_000V	CGP	18:37400855-37414514

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0005509	IEA	calcium ion binding
GO:0005886	IEA	plasma membrane
GO:0007156	IEA	homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021	IEA	integral component of membrane

Homologs
ENSEMBL Accession	Gene Name	Description	Biotype	Species
ENSDARG00000010684	CU915772.1	Uncharacterized protein	protein_coding	Danio_rerio
ENSDARG00000071889	pcdh2g8	protocadherin 2 gamma 8	protein_coding	Danio_rerio
ENSDARG00000071891	pcdh2g6	protocadherin 2 gamma 6	protein_coding	Danio_rerio
ENSDARG00000071892	CU915772.1	Uncharacterized protein	protein_coding	Danio_rerio
ENSDARG00000074738	pcdh2g9	protocadherin 2 gamma 9	protein_coding	Danio_rerio
ENSDARG00000077343	CT573264.2	Uncharacterized protein	protein_coding	Danio_rerio
ENSDARG00000077867	CT573264.3	Uncharacterized protein	protein_coding	Danio_rerio
ENSDARG00000079937	pcdh2g5	protocadherin 2 gamma 5	protein_coding	Danio_rerio
ENSG00000081818	PCDHB4	protocadherin beta 4	protein_coding	Homo_sapiens

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