C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057228 Pcdhb9-201 ENSMUSG00000051242 10090 + 18:37400855-37403909 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057228
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057228 4.728±3.68 0.563±0.12 0.767±0.03 1.955±0.45 1.336±0.50 0.754±0.20 0.230±0.03 0.354±0.05 0.033±0.02 5.066±1.39 0.054±0.02 5.661±2.08 0.062±0.10 0.119±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000O CGP 18:37355271-37403909
CIL_00062S CIL_00062S_000V CGP 18:37400855-37414514

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000194152 PCDHB4-001 protein_coding Homo_sapiens 0 1836
ENST00000194155 PCDHB2-001 protein_coding Homo_sapiens 0 830
ENST00000231134 PCDHB5-001 protein_coding Homo_sapiens 0 929
ENST00000231136 PCDHB6-001 protein_coding Homo_sapiens 0 887
ENST00000231173 PCDHB15-001 protein_coding Homo_sapiens 0 845
ENST00000239444 PCDHB8-001 protein_coding Homo_sapiens 0 795
ENST00000239446 PCDHB10-001 protein_coding Homo_sapiens 0 880
ENST00000316105 PCDHB9-001 protein_coding Homo_sapiens 0 832
ENST00000515856 PCDHB10-201 protein_coding Homo_sapiens 0 880
ENST00000539533 PCDHB17-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 857
ENST00000543635 PCDHB3-201 protein_coding Homo_sapiens 0 1114
ENST00000622947 PCDHB2-003 protein_coding Homo_sapiens 0 824
ENST00000622991 PCDHB6-002 protein_coding Homo_sapiens 0 876
ENST00000623266 PCDHB9-002 processed_transcript Homo_sapiens 0 276
ENST00000623466 PCDHB17-002 processed_transcript Homo_sapiens 0 857
ENST00000623478 PCDHB4-002 processed_transcript Homo_sapiens 0 747
ENST00000623915 PCDHB5-002 protein_coding Homo_sapiens 0 691
ENST00000624909 PCDHB9-003 protein_coding Homo_sapiens 0 252

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