C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000081818 PCDHB4 9606 + 5:141121799-141125623 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000194152 PCDHB4-001 141121799-141125623 protein_coding
  ENST00000623478 PCDHB4-002 141121818-141124147 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000194152
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000194152 3.359±0.00 1.264±0.00 0.865±0.00 3.716±1.98 1.493±0.00 2.248±0.00 1.036±0.00 0.896±0.81 1.239±0.00 1.633±0.76 0.147±0.00 1.932±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_0004 CGP 5:141094578-141152636
CIL_00062S CIL_00062S_0005 CGP 5:141100473-141152636
CIL_00062S CIL_00062S_0003 CGP 5:141121799-141138625

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007399 TAS nervous system development
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0045111 IDA intermediate filament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSMUSG00000045062 Pcdhb7 protocadherin beta 7 protein_coding Mus_musculus
ENSMUSG00000051242 Pcdhb9 protocadherin beta 9 protein_coding Mus_musculus
ENSMUSG00000063687 Pcdhb5 protocadherin beta 5 protein_coding Mus_musculus

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