C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000051486 Pcdhb11 10090 + 18:37421418-37425032 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000053073 Pcdhb11-201 37421418-37425032 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053073
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053073 0.892±0.45 0.438±0.06 0.257±0.01 0.827±0.15 0.891±0.20 0.530±0.10 0.169±0.03 0.333±0.06 0.028±0.03 2.242±0.13 0.065±0.02 1.938±1.08 0.040±0.05 0.064±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000M CGP 18:37411674-37425032
CIL_00062S CIL_00062S_000W CGP 18:37421418-37438654

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSG00000113209 PCDHB5 protocadherin beta 5 protein_coding Homo_sapiens

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