C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053073 Pcdhb11-201 ENSMUSG00000051486 10090 + 18:37421418-37425032 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053073
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053073 0.892±0.45 0.438±0.06 0.257±0.01 0.827±0.15 0.891±0.20 0.530±0.10 0.169±0.03 0.333±0.06 0.028±0.03 2.242±0.13 0.065±0.02 1.938±1.08 0.040±0.05 0.064±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000M CGP 18:37411674-37425032
CIL_00062S CIL_00062S_000W CGP 18:37421418-37438654

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000194152 PCDHB4-001 protein_coding Homo_sapiens 0 1062
ENST00000194155 PCDHB2-001 protein_coding Homo_sapiens 0 872
ENST00000231130 PCDHB3-001 protein_coding Homo_sapiens 0 913
ENST00000231134 PCDHB5-001 protein_coding Homo_sapiens 0 1690
ENST00000231136 PCDHB6-001 protein_coding Homo_sapiens 0 994
ENST00000231137 PCDHB7-001 protein_coding Homo_sapiens 0 774
ENST00000231173 PCDHB15-001 protein_coding Homo_sapiens 0 913
ENST00000239444 PCDHB8-001 protein_coding Homo_sapiens 0 850
ENST00000239446 PCDHB10-001 protein_coding Homo_sapiens 0 830
ENST00000239449 PCDHB14-001 protein_coding Homo_sapiens 0 797
ENST00000239450 PCDHB12-001 protein_coding Homo_sapiens 0 920
ENST00000316105 PCDHB9-001 protein_coding Homo_sapiens 0 832
ENST00000341948 PCDHB13-001 protein_coding Homo_sapiens 0 830
ENST00000354757 PCDHB11-001 protein_coding Homo_sapiens 0 902
ENST00000515856 PCDHB10-201 protein_coding Homo_sapiens 0 830
ENST00000524813 PCDHB18-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 754
ENST00000526308 PCDHB18-002 processed_transcript Homo_sapiens 0 754
ENST00000539533 PCDHB17-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 990
ENST00000543635 PCDHB3-201 protein_coding Homo_sapiens 0 913
ENST00000609684 PCDHB16-001 protein_coding Homo_sapiens 0 953
ENST00000618012 PCDHGB9P-001 unprocessed_pseudogene Homo_sapiens 0.000000000000001 90
ENST00000622947 PCDHB2-003 protein_coding Homo_sapiens 0 872
ENST00000622978 PCDHB12-003 protein_coding Homo_sapiens 0 870
ENST00000622991 PCDHB6-002 protein_coding Homo_sapiens 0 994
ENST00000623466 PCDHB17-002 processed_transcript Homo_sapiens 0 990
ENST00000623478 PCDHB4-002 processed_transcript Homo_sapiens 0 780
ENST00000623671 PCDHB15-002 protein_coding Homo_sapiens 5e-19 99
ENST00000623915 PCDHB5-002 protein_coding Homo_sapiens 0 758
ENST00000624887 PCDHB11-002 protein_coding Homo_sapiens 0 876
ENST00000624896 PCDHB14-003 protein_coding Homo_sapiens 0 797
ENST00000624949 PCDHB12-002 protein_coding Homo_sapiens 0 870

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