C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000051599 Pcdhb2 10090 + 18:37294840-37297613 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056522 Pcdhb2-201 37294840-37297613 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056522
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056522 0.494±0.40 0.150±0.05 0.126±0.09 0.588±0.14 0.303±0.21 0.111±0.05 0.092±0.03 0.055±0.04 0.017±0.01 0.677±0.10 0.018±0.01 0.895±0.43 0.019±0.01 0.147±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000Y CGP 18:37264998-37297613
CIL_00062S CIL_00062S_000X CGP 18:37294840-37304585

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSG00000112852 PCDHB2 protocadherin beta 2 protein_coding Homo_sapiens

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