C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000112852 PCDHB2 9606 + 5:141094578-141098703 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000194155 PCDHB2-001 141094578-141098703 protein_coding
  ENST00000622947 PCDHB2-003 141094606-141097264 protein_coding
  ENST00000624874 PCDHB2-004 141094622-141095581 protein_coding
  ENST00000624994 PCDHB2-006 141096834-141097130 protein_coding
  ENST00000625033 PCDHB2-005 141094627-141095660 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000194155ENST00000622947ENST00000625033
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000194155 1.052±0.00 0.549±0.00 0.067±0.00 0.451±0.05 0.509±0.00 0.424±0.37 0.258±0.21 0.365±0.00 0.075±0.06 0.415±0.12 0.124±0.01 0.444±0.04 0.198±0.03 1.139±0.30
ENST00000622947 N/A N/A 0.099±0.00 N/A N/A 0.682±0.00 N/A 0.316±0.26 N/A N/A 0.211±0.00 0.281±0.16 0.324±0.16 1.813±0.39
ENST00000625033 N/A N/A N/A 0.817±0.00 N/A N/A 1.103±1.03 N/A N/A N/A 0.498±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000C CGP 5:141051135-141098703
CIL_00062S CIL_00062S_0004 CGP 5:141094578-141152636

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007399 TAS nervous system development
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSMUSG00000051599 Pcdhb2 protocadherin beta 2 protein_coding Mus_musculus

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