C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000056522 Pcdhb2-201 ENSMUSG00000051599 10090 + 18:37294840-37297613 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056522
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056522 0.494±0.40 0.150±0.05 0.126±0.09 0.588±0.14 0.303±0.21 0.111±0.05 0.092±0.03 0.055±0.04 0.017±0.01 0.677±0.10 0.018±0.01 0.895±0.43 0.019±0.01 0.147±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000Y CGP 18:37264998-37297613
CIL_00062S CIL_00062S_000X CGP 18:37294840-37304585

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000194152 PCDHB4-001 protein_coding Homo_sapiens 0 965
ENST00000194155 PCDHB2-001 protein_coding Homo_sapiens 0 1910
ENST00000231130 PCDHB3-001 protein_coding Homo_sapiens 0 924
ENST00000231134 PCDHB5-001 protein_coding Homo_sapiens 0 918
ENST00000231136 PCDHB6-001 protein_coding Homo_sapiens 0 861
ENST00000231137 PCDHB7-001 protein_coding Homo_sapiens 0 887
ENST00000231173 PCDHB15-001 protein_coding Homo_sapiens 0 931
ENST00000239444 PCDHB8-001 protein_coding Homo_sapiens 0 857
ENST00000239446 PCDHB10-001 protein_coding Homo_sapiens 0 911
ENST00000239449 PCDHB14-001 protein_coding Homo_sapiens 0 998
ENST00000239450 PCDHB12-001 protein_coding Homo_sapiens 0 856
ENST00000316105 PCDHB9-001 protein_coding Homo_sapiens 0 905
ENST00000341948 PCDHB13-001 protein_coding Homo_sapiens 0 894
ENST00000354757 PCDHB11-001 protein_coding Homo_sapiens 0 887
ENST00000515856 PCDHB10-201 protein_coding Homo_sapiens 0 911
ENST00000524813 PCDHB18-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 743
ENST00000526308 PCDHB18-002 processed_transcript Homo_sapiens 0 743
ENST00000539533 PCDHB17-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 846
ENST00000543635 PCDHB3-201 protein_coding Homo_sapiens 0 904
ENST00000609684 PCDHB16-001 protein_coding Homo_sapiens 0 924
ENST00000622947 PCDHB2-003 protein_coding Homo_sapiens 0 1524
ENST00000622978 PCDHB12-003 protein_coding Homo_sapiens 0 819
ENST00000622991 PCDHB6-002 protein_coding Homo_sapiens 0 861
ENST00000623266 PCDHB9-002 processed_transcript Homo_sapiens 0 220
ENST00000623466 PCDHB17-002 processed_transcript Homo_sapiens 0 846
ENST00000623478 PCDHB4-002 processed_transcript Homo_sapiens 0 782
ENST00000623915 PCDHB5-002 protein_coding Homo_sapiens 0 680
ENST00000624887 PCDHB11-002 protein_coding Homo_sapiens 0 859
ENST00000624896 PCDHB14-003 protein_coding Homo_sapiens 0 948
ENST00000624909 PCDHB9-003 protein_coding Homo_sapiens 4.2039e-45 185
ENST00000624949 PCDHB12-002 protein_coding Homo_sapiens 0 819
ENST00000625044 PCDHB16-002 protein_coding Homo_sapiens 0 420

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