C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000051678 Pcdhb6 10090 + 18:37333946-37336398 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000061717 Pcdhb6-201 37333946-37336398 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061717
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061717 0.633±0.52 0.306±0.05 0.112±0.00 0.732±0.00 0.352±0.03 0.116±0.03 0.078±0.03 0.167±0.08 0.014±0.01 0.818±0.18 0.022±0.01 1.090±0.74 0.011±0.00 0.032±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_0010 CGP 18:37320381-37336398
CIL_00062S CIL_00062S_000Z CGP 18:37333946-37345207

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSG00000113209 PCDHB5 protocadherin beta 5 protein_coding Homo_sapiens

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