C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061717 Pcdhb6-201 ENSMUSG00000051678 10090 + 18:37333946-37336398 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061717
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061717 0.633±0.52 0.306±0.05 0.112±0.00 0.732±0.00 0.352±0.03 0.116±0.03 0.078±0.03 0.167±0.08 0.014±0.01 0.818±0.18 0.022±0.01 1.090±0.74 0.011±0.00 0.032±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_0010 CGP 18:37320381-37336398
CIL_00062S CIL_00062S_000Z CGP 18:37333946-37345207

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000231134 PCDHB5-001 protein_coding Homo_sapiens 0 1783
ENST00000231173 PCDHB15-001 protein_coding Homo_sapiens 0 905
ENST00000239444 PCDHB8-001 protein_coding Homo_sapiens 0 861
ENST00000239446 PCDHB10-001 protein_coding Homo_sapiens 0 863
ENST00000341948 PCDHB13-001 protein_coding Homo_sapiens 0 841
ENST00000515856 PCDHB10-201 protein_coding Homo_sapiens 0 863
ENST00000623671 PCDHB15-002 protein_coding Homo_sapiens 2e-22 110

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