C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SRY (sex determining region Y)-box 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000051817 Sox12 10090 - 2:152393611-152398063 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000063332 Sox12-201 152393614-152398046 protein_coding
  ENSMUST00000182625 Sox12-002 152393611-152398063 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000063332ENSMUST00000182625
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000063332 0.241±0.00 N/A N/A 1.802±0.00 1.225±0.00 N/A 0.309±0.00 N/A N/A N/A 0.065±0.00 N/A 0.326±0.12 0.096±0.00
ENSMUST00000182625 5.920±4.65 4.836±0.56 5.507±0.62 23.935±15.88 3.124±0.28 1.858±0.20 3.089±0.73 3.952±0.26 2.489±1.90 2.390±0.07 0.334±0.08 17.406±4.90 2.145±1.58 2.518±1.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0002 VISTA 2:152099091-152699726

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000976 IDA transcription regulatory region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001105 IDA RNA polymerase II transcription coactivator activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0021510 IDA spinal cord development
GO:0032993 IDA protein-DNA complex
GO:0045165 IEA cell fate commitment
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0065004 IDA protein-DNA complex assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025847 sox12 SRY (sex determining region Y)-box 12 protein_coding Danio_rerio
ENSG00000177732 SOX12 SRY (sex determining region Y)-box 12 protein_coding Homo_sapiens

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