Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	SRY (sex determining region Y)-box 12
ENSMUST00000182625	Sox12-002	ENSMUSG00000051817	10090	-	2:152393611-152398063	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENSMUST00000182625	5.920±4.65	4.836±0.56	5.507±0.62	23.935±15.88	3.124±0.28	1.858±0.20	3.089±0.73	3.952±0.26	2.489±1.90	2.390±0.07	0.334±0.08	17.406±4.90	2.145±1.58	2.518±1.15

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_00096R	CIL_00096R_0002	VISTA	2:152099091-152699726

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0000976	IDA	transcription regulatory region sequence-specific DNA binding
GO:0001077	IDA	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001105	IDA	RNA polymerase II transcription coactivator activity
GO:0005634	IEA	nucleus
GO:0006351	IEA	transcription, DNA-templated
GO:0021510	IDA	spinal cord development
GO:0032993	IDA	protein-DNA complex
GO:0045165	IEA	cell fate commitment
GO:0045944	IDA	positive regulation of transcription from RNA polymerase II promoter
GO:0065004	IDA	protein-DNA complex assembly

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSDART00000112979	sox10-001	protein_coding	Danio_rerio	0.0000005	62
ENST00000244745	SOX4-001	protein_coding	Homo_sapiens	0	270
ENST00000250055	SOX15-001	protein_coding	Homo_sapiens	2e-25	121
ENST00000342665	SOX12-001	protein_coding	Homo_sapiens	0	2115
ENST00000538513	SOX15-002	protein_coding	Homo_sapiens	2e-25	121
ENST00000570788	SOX15-003	protein_coding	Homo_sapiens	2e-25	121

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