C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000063332 Sox12-201 ENSMUSG00000051817 10090 - 2:152393614-152398046 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartMusclePlacentaTestisENSMUST00000063332
Transcript ID Adipose Brain Breast Heart Muscle Placenta Testis
ENSMUST00000063332 0.241±0.00 1.802±0.00 1.225±0.00 0.309±0.00 0.065±0.00 0.326±0.12 0.096±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0002 VISTA 2:152099091-152699726

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000976 IDA transcription regulatory region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001105 IDA RNA polymerase II transcription coactivator activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0021510 IDA spinal cord development
GO:0032993 IDA protein-DNA complex
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0065004 IDA protein-DNA complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000112979 sox10-001 protein_coding Danio_rerio 0.0000005 62
ENST00000244745 SOX4-001 protein_coding Homo_sapiens 0 270
ENST00000250055 SOX15-001 protein_coding Homo_sapiens 2e-25 121
ENST00000342665 SOX12-001 protein_coding Homo_sapiens 0 1788
ENST00000538513 SOX15-002 protein_coding Homo_sapiens 2e-25 121
ENST00000570788 SOX15-003 protein_coding Homo_sapiens 2e-25 121

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