C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PR domain containing 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000051977 Prdm9 10090 - 17:15543079-15564354 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000128267 Prdm9-002 15545119-15555871 retained_intron
  ENSMUST00000130297 Prdm9-005 15545232-15555403 retained_intron
  ENSMUST00000132675 Prdm9-004 15562816-15564322 processed_transcript
  ENSMUST00000139911 Prdm9-003 15558869-15564354 retained_intron
  ENSMUST00000147532 Prdm9-001 15553224-15564340 protein_coding
  ENSMUST00000167994 Prdm9-201 15543079-15563323 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENSMUST00000128267ENSMUST00000130297ENSMUST00000139911ENSMUST00000167994
Transcript ID Adrenal Bladder Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000128267 N/A N/A N/A N/A N/A N/A N/A 0.551±0.09 0.972±0.00 1.646±0.67 N/A
ENSMUST00000130297 N/A N/A N/A 1.738±0.00 N/A N/A N/A N/A 1.103±0.21 N/A 4.401±0.00
ENSMUST00000139911 N/A N/A N/A N/A N/A N/A N/A 1.136±0.00 1.627±0.00 N/A N/A
ENSMUST00000167994 0.911±0.00 1.056±0.03 0.164±0.00 0.554±0.00 0.408±0.05 0.228±0.06 0.586±0.00 0.439±0.19 0.459±0.14 0.470±0.33 0.246±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0002 VISTA 17:15140120-15741360

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005654 IC nucleoplasm
GO:0005694 IEA chromosome
GO:0006311 IEA meiotic gene conversion
GO:0006351 IEA transcription, DNA-templated
GO:0007283 IMP spermatogenesis
GO:0010844 IDA recombination hotspot binding
GO:0010845 IMP positive regulation of reciprocal meiotic recombination
GO:0016571 IDA histone methylation
GO:0034968 IMP histone lysine methylation
GO:0042800 IDA histone methyltransferase activity (H3-K4 specific)
GO:0043565 IDA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0051321 IEA meiotic cell cycle
GO:0051568 IDA histone H3-K4 methylation
GO:0060903 IMP positive regulation of meiosis I

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000164256 PRDM9 PR domain containing 9 protein_coding Homo_sapiens

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