C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167994 Prdm9-201 ENSMUSG00000051977 10090 - 17:15543079-15563323 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENSMUST00000167994
Transcript ID Adrenal Bladder Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167994 0.911±0.00 1.056±0.03 0.164±0.00 0.554±0.00 0.408±0.05 0.228±0.06 0.586±0.00 0.439±0.19 0.459±0.14 0.470±0.33 0.246±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0002 VISTA 17:15140120-15741360

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005654 IC nucleoplasm
GO:0005694 IEA chromosome
GO:0006311 IEA meiotic gene conversion
GO:0006351 IEA transcription, DNA-templated
GO:0007283 IMP spermatogenesis
GO:0010844 IDA recombination hotspot binding
GO:0010845 IMP positive regulation of reciprocal meiotic recombination
GO:0016571 IDA histone methylation
GO:0034968 IMP histone lysine methylation
GO:0042800 IDA histone methyltransferase activity (H3-K4 specific)
GO:0043565 IDA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0051321 IEA meiotic cell cycle
GO:0051568 IDA histone H3-K4 methylation
GO:0060903 IMP positive regulation of meiosis I

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296682 PRDM9-001 protein_coding Homo_sapiens 0 2146
ENST00000325921 PRDM7-001 retained_intron Homo_sapiens 0 231
ENST00000340911 ZNF169-001 protein_coding Homo_sapiens 0 403
ENST00000395395 ZNF169-003 protein_coding Homo_sapiens 0 403
ENST00000449207 PRDM7-002 protein_coding Homo_sapiens 0 935

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