C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: APOBEC1 complementation factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000052595 A1cf 10090 + 19:31868761-31949406 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000075838 A1cf-201 31868761-31949406 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075838
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075838 0.008±0.00 0.039±0.01 0.004±0.00 0.152±0.05 3.549±2.15 0.022±0.00 6.837±4.54 16.314±12.35 0.026±0.02 0.012±0.00 0.039±0.01 0.785±1.05 0.241±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 TAS RNA binding
GO:0003727 ISS single-stranded RNA binding
GO:0005634 IDA nucleus
GO:0005737 ISS cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0006397 IEA mRNA processing
GO:0010609 IGI mRNA localization resulting in posttranscriptional regulation of gene expression
GO:0016554 TAS cytidine to uridine editing
GO:0016556 IGI mRNA modification
GO:0030895 ISS apolipoprotein B mRNA editing enzyme complex
GO:0050821 ISS protein stabilization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002968 a1cf apobec1 complementation factor protein_coding Danio_rerio
ENSG00000148584 A1CF APOBEC1 complementation factor protein_coding Homo_sapiens

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