C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 21
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000053483 Usp21 10090 - 1:171281945-171287991 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000065941 Usp21-001 171281945-171287991 protein_coding
  ENSMUST00000111305 Usp21-004 171281949-171287924 protein_coding
  ENSMUST00000111306 Usp21-002 171281958-171287961 protein_coding
  ENSMUST00000126557 Usp21-008 171283031-171283986 retained_intron
  ENSMUST00000126729 Usp21-009 171282799-171284587 retained_intron
  ENSMUST00000127101 Usp21-006 171283520-171286950 retained_intron
  ENSMUST00000142656 Usp21-010 171282293-171283167 retained_intron
  ENSMUST00000144393 Usp21-011 171281958-171282906 retained_intron
  ENSMUST00000147176 Usp21-007 171283408-171285614 retained_intron
  ENSMUST00000149187 Usp21-003 171281958-171287955 nonsense_mediated_decay
  ENSMUST00000153164 Usp21-005 171284463-171287959 retained_intron
  ENSMUST00000174720 Usp21-012 171284932-171286806 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065941ENSMUST00000111305ENSMUST00000111306ENSMUST00000142656ENSMUST00000144393ENSMUST00000147176ENSMUST00000153164
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065941 14.984±4.40 18.697±2.72 15.333±0.56 26.616±12.51 15.157±3.73 13.765±1.30 6.880±0.72 14.394±2.28 8.921±3.33 13.443±1.14 6.496±0.84 19.469±5.82 8.926±3.18 11.976±5.60
ENSMUST00000111305 N/A 3.256±0.00 N/A N/A 2.290±0.09 2.793±0.00 N/A N/A N/A N/A N/A 4.803±0.75 2.980±0.00 0.445±0.00
ENSMUST00000111306 N/A 8.228±0.00 N/A N/A N/A 3.926±0.00 N/A N/A N/A N/A N/A N/A N/A 1.665±0.00
ENSMUST00000142656 N/A N/A N/A N/A 7.583±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144393 N/A N/A N/A N/A 8.446±0.00 N/A N/A N/A N/A N/A N/A 13.034±0.33 N/A N/A
ENSMUST00000147176 N/A N/A N/A 12.573±0.00 N/A N/A N/A N/A N/A N/A N/A 13.423±0.00 4.233±0.67 2.581±0.00
ENSMUST00000153164 4.082±1.52 4.243±1.12 3.715±0.00 5.462±1.02 3.654±0.66 2.724±0.23 1.326±0.00 N/A 1.750±0.33 2.990±0.29 1.623±0.00 5.232±1.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003713 IDA transcription coactivator activity
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 IEA ubiquitin-specific protease activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008234 ISS cysteine-type peptidase activity
GO:0016578 IDA histone deubiquitination
GO:0019784 IEA NEDD8-specific protease activity
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000094280 USP21 ubiquitin specific peptidase 21 protein_coding Danio_rerio
ENSG00000143258 USP21 ubiquitin specific peptidase 21 protein_coding Homo_sapiens

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