C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 1600014C10 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000054676 1600014C10Rik 10090 + 7:38183217-38197568 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067854 1600014C10Rik-201 38183787-38197563 protein_coding
  ENSMUST00000165308 1600014C10Rik-202 38183217-38197563 protein_coding
  ENSMUST00000177983 1600014C10Rik-007 38183848-38188956 protein_coding
  ENSMUST00000178207 1600014C10Rik-001 38183217-38197568 processed_transcript
  ENSMUST00000178876 1600014C10Rik-003 38183653-38197568 processed_transcript
  ENSMUST00000178890 1600014C10Rik-004 38183240-38183899 processed_transcript
  ENSMUST00000179503 1600014C10Rik-006 38186289-38195266 processed_transcript
  ENSMUST00000179525 1600014C10Rik-002 38183261-38196592 processed_transcript
  ENSMUST00000179992 1600014C10Rik-005 38183898-38194972 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067854ENSMUST00000165308ENSMUST00000177983ENSMUST00000178876ENSMUST00000179503ENSMUST00000179525ENSMUST00000179992
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067854 5.841±0.04 4.142±1.70 8.734±1.70 4.642±2.85 6.420±1.93 2.769±1.06 4.347±0.68 5.805±1.64 4.117±3.63 4.920±0.67 2.112±0.39 5.216±1.95 4.435±0.37 0.663±0.19
ENSMUST00000165308 5.584±0.00 2.327±0.08 N/A N/A N/A N/A N/A N/A 14.045±0.00 N/A N/A 1.343±0.00 N/A N/A
ENSMUST00000177983 N/A N/A N/A N/A N/A 14.935±5.12 N/A N/A 183.097±30.24 N/A N/A N/A N/A N/A
ENSMUST00000178876 N/A N/A N/A N/A 8.183±0.00 1.859±0.52 N/A N/A N/A N/A N/A N/A N/A 0.540±0.00
ENSMUST00000179503 N/A N/A N/A N/A N/A 6.371±2.35 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000179525 28.973±15.55 15.289±2.00 18.211±0.15 1.545±0.00 28.983±6.32 3.798±1.60 10.776±1.36 7.950±3.82 40.990±31.34 5.807±0.48 7.212±0.76 7.009±2.78 10.660±2.93 0.923±0.30
ENSMUST00000179992 N/A N/A N/A N/A N/A 4.209±0.00 N/A N/A N/A N/A N/A N/A N/A 6.196±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090S CIL_00090S_0002 VISTA 7:37596462-38197435
CIL_000834 CIL_000834_0002 VISTA 7:37604895-38205961
CIL_000835 CIL_000835_0002 VISTA 7:37670403-38271286
CIL_0008TZ CIL_0008TZ_0002 VISTA 7:37750392-38351469

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 ISS mitochondrion
GO:0005783 ISS endoplasmic reticulum
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058857 C18H19orf12 (1 of 3) chromosome 19 open reading frame 12 protein_coding Danio_rerio
ENSDARG00000088500 C7H19orf12 (2 of 3) chromosome 19 open reading frame 12 protein_coding Danio_rerio
ENSDARG00000092703 C7H19orf12 (3 of 3) chromosome 19 open reading frame 12 protein_coding Danio_rerio
ENSG00000131943 C19orf12 chromosome 19 open reading frame 12 protein_coding Homo_sapiens

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