C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: dachshund 1 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000055639 Dach1 10090 - 14:97786853-98169765 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000069334 Dach1-002 97786853-98169543 protein_coding
  ENSMUST00000071533 Dach1-001 97786853-98169543 protein_coding
  ENSMUST00000156684 Dach1-003 97825866-98169765 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069334ENSMUST00000071533ENSMUST00000156684
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069334 1.158±0.32 0.748±0.19 1.402±0.07 4.642±2.78 1.201±0.46 0.380±0.05 0.839±0.17 1.071±0.51 0.106±0.08 2.687±0.47 0.742±0.18 2.084±0.42 0.110±0.06 0.139±0.09
ENSMUST00000071533 0.699±0.29 0.544±0.02 0.697±0.16 1.998±1.10 0.439±0.18 0.314±0.12 0.514±0.10 1.263±0.23 0.066±0.06 1.617±0.27 0.400±0.00 1.184±0.60 N/A 0.158±0.01
ENSMUST00000156684 0.390±0.13 0.392±0.01 N/A N/A 0.712±0.12 0.311±0.02 0.398±0.00 0.861±0.37 0.027±0.00 2.034±0.19 N/A 2.132±1.08 0.018±0.00 0.068±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VF CIL_0003VF_0002 CGP 14:96105259-98169765
CIL_0007L7 CIL_0007L7_0003 UCNEbase 14:96995185-98990071
CIL_0008WD CIL_0008WD_0002 VISTA 14:97188749-97791425
CIL_0008WC CIL_0008WC_0002 VISTA 14:97237587-97838095
CIL_000957 CIL_000957_0002 VISTA 14:97259884-97861752
CIL_000844 CIL_000844_0002 VISTA 14:97260090-97860808
CIL_0009B5 CIL_0009B5_0002 VISTA 14:97540336-98140805
CIL_0008M4 CIL_0008M4_0002 VISTA 14:97718788-98320055
CIL_0008M8 CIL_0008M8_0002 VISTA 14:97719040-98319788
CIL_000958 CIL_000958_0002 VISTA 14:97746622-98348648
CIL_0008ZX CIL_0008ZX_0002 VISTA 14:97772481-98373981
CIL_0008LW CIL_0008LW_0002 VISTA 14:97782963-98385270
CIL_0004PD CIL_0004PD_0003 CGP 14:97786853-99046136

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001075 IDA RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001967 IMP suckling behavior
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007585 IMP respiratory gaseous exchange
GO:0008283 IMP cell proliferation
GO:0010944 IEA negative regulation of transcription by competitive promoter binding
GO:0030336 IEA negative regulation of cell migration
GO:0046545 IGI development of primary female sexual characteristics
GO:0048147 IDA negative regulation of fibroblast proliferation
GO:0051123 IDA RNA polymerase II transcriptional preinitiation complex assembly
GO:0060244 IGI negative regulation of cell proliferation involved in contact inhibition

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003142 dachc dachshund c protein_coding Danio_rerio
ENSDARG00000069440 dachd dachshund d protein_coding Danio_rerio
ENSG00000276644 DACH1 dachshund family transcription factor 1 protein_coding Homo_sapiens

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