C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007L7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
DACH1 UCNEbase 9606 13:70667313-71866528
GeneTranscriptPositionBiotype
ENSG00000225801 (RABEPKP1)
Rab9 effector protein with kelch motifs pseudogene 1 		ENST00000440529 (RABEPKP1-001) 71296210-71297235 processed_pseudogene
ENSG00000226554 (MTCL1P1)
MTCL1 pseudogene 1 		ENST00000446207 (MTCL1P1-001) 70923664-70924455 processed_pseudogene
ENSG00000226846 (LINC00348)
long intergenic non-protein coding RNA 348 		ENST00000428761 (LINC00348-001) 71015141-71168417 lincRNA
ENSG00000233460 (RPL35AP31)
ribosomal protein L35a pseudogene 31 		ENST00000418340 (RPL35AP31-001) 71845981-71846317 processed_pseudogene
ENSG00000236534 (H3F3BP1)
H3 histone, family 3B (H3.3B) pseudogene 1 		ENST00000440551 (H3F3BP1-001) 71675067-71675469 processed_pseudogene
ENSG00000237816 (RPL21P109)
ribosomal protein L21 pseudogene 109 		ENST00000422213 (RPL21P109-001) 71704181-71704655 processed_pseudogene
ENSG00000276644 (DACH1)
dachshund family transcription factor 1 		ENST00000611519 (DACH1-201) 71437966-71867192 protein_coding
ENST00000613252 (DACH1-001) 71437966-71867192 protein_coding
ENST00000619232 (DACH1-002) 71439946-71866769 protein_coding
ENST00000620444 (DACH1-202) 71437966-71867192 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0007L7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
DACH1 UCNEbase 9606 13:71866528-72677795
GeneTranscriptPositionBiotype
ENSG00000276644 (DACH1)
dachshund family transcription factor 1 		ENST00000611519 (DACH1-201) 71437966-71867192 protein_coding
ENST00000613252 (DACH1-001) 71437966-71867192 protein_coding
ENST00000619232 (DACH1-002) 71439946-71866769 protein_coding
ENST00000620444 (DACH1-202) 71437966-71867192 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0007L7_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
DACH1 UCNEbase 10090 14:96995185-98990071
GeneTranscriptPositionBiotype
ENSMUSG00000055639 (Dach1)
dachshund 1 (Drosophila) 		ENSMUST00000069334 (Dach1-002) 97786853-98169543 protein_coding
ENSMUST00000071533 (Dach1-001) 97786853-98169543 protein_coding
ENSMUST00000156684 (Dach1-003) 97825866-98169765 retained_intron
ENSMUSG00000086133 (Gm16331)
predicted gene 16331 		ENSMUST00000144274 (Gm16331-001) 98118509-98119006 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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CIL_0007L7_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
DACH1 UCNEbase 7955 1:29671633-29766989
GeneTranscriptPositionBiotype
ENSDARG00000003142 (dachc)
dachshund c 		ENSDART00000018827 (dachc-001) 29641397-29745261 protein_coding
ENSDART00000124561 (dachc-003) 29674737-29697793 processed_transcript
ENSDART00000135617 (dachc-002) 29645500-29668747 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0007L7_0005 (Click to Hide/Show)
Source ID Type Tax ID Position
DACH1 UCNEbase 7955 9:31867229-32119522
GeneTranscriptPositionBiotype
ENSDARG00000069440 (dachd)
dachshund d 		ENSDART00000101070 (dachd-001) 31923857-32096012 protein_coding
ENSDART00000140370 (dachd-002) 31853598-32048634 processed_transcript
ENSDARG00000095476 (si:ch211-277g23.4)
si:ch211-277g23.4 		ENSDART00000132478 (si:ch211-277g23.4-001) 32109364-32199710 processed_transcript

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007L7_0001ENSG00000225801ENST00000440529ENSG00000226554ENST00000446207ENSG00000226846ENST00000428761ENSG00000233460ENST00000418340ENSG00000236534ENST00000440551ENSG00000237816ENST00000422213ENSG00000276644ENST00000611519ENST00000613252ENST00000619232ENST00000620444CIL_0007L7_0002ENSG00000276644ENST00000611519ENST00000613252ENST00000619232ENST00000620444CIL_0007L7_0003ENSMUSG00000055639ENSMUST00000069334ENSMUST00000071533ENSMUST00000156684ENSMUSG00000086133ENSMUST00000144274CIL_0007L7_0004ENSDARG00000003142ENSDART00000018827ENSDART00000124561ENSDART00000135617CIL_0007L7_0005ENSDARG00000069440ENSDART00000101070ENSDART00000140370ENSDARG00000095476ENSDART00000132478
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007L7_0001ENSG00000225801ENST00000440529ENSG00000226554ENST00000446207ENSG00000226846ENST00000428761ENSG00000233460ENST00000418340ENSG00000236534ENST00000440551ENSG00000237816ENST00000422213ENSG00000276644ENST00000611519ENST00000613252ENST00000619232ENST00000620444CIL_0007L7_0002ENSG00000276644ENST00000611519ENST00000613252ENST00000619232ENST00000620444CIL_0007L7_0003ENSMUSG00000055639ENSMUST00000069334ENSMUST00000071533ENSMUST00000156684ENSMUSG00000086133ENSMUST00000144274CIL_0007L7_0004ENSDARG00000003142ENSDART00000018827CIL_0007L7_0005ENSDARG00000069440ENSDART00000101070ENSDARG00000095476ENSDART00000132478
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000225801 ENST00000440529 N/A 0.023±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226554 ENST00000446207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.172±0.00
ENSG00000226846 ENST00000428761 N/A 0.009±0.00 N/A 0.042±0.00 0.031±0.00 N/A 0.025±0.00 N/A 0.058±0.00 N/A N/A N/A N/A 0.392±0.00
ENSG00000233460 ENST00000418340 N/A N/A 0.260±0.00 0.185±0.00 1.038±0.87 0.054±0.00 0.106±0.00 N/A N/A 0.583±0.26 N/A 0.140±0.00 N/A N/A
ENSG00000236534 ENST00000440551 0.195±0.00 N/A N/A 0.153±0.00 0.053±0.00 N/A 0.105±0.00 0.106±0.00 N/A 0.098±0.00 0.088±0.00 N/A 0.172±0.00 0.218±0.03
ENSG00000237816 ENST00000422213 0.103±0.00 N/A 0.280±0.00 N/A N/A N/A N/A N/A 0.048±0.00 0.025±0.00 N/A N/A N/A N/A
ENSG00000276644 ENST00000611519 N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000613252 1.502±0.00 0.298±0.00 1.199±0.00 0.564±0.41 0.208±0.00 0.917±0.38 0.300±0.19 2.702±0.00 0.047±0.00 1.081±0.67 0.218±0.00 0.446±0.14 1.578±0.60 1.557±0.05
ENST00000619232 0.709±0.00 N/A N/A 0.376±0.00 N/A N/A 0.197±0.00 0.272±0.00 0.247±0.00 N/A 0.068±0.00 0.662±0.00 1.305±0.00 5.839±4.43
ENST00000620444 N/A N/A N/A N/A 0.147±0.00 0.234±0.00 0.077±0.00 0.349±0.00 N/A 0.447±0.00 0.116±0.00 0.153±0.02 0.982±0.00 0.813±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000276644 ENST00000611519 N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000613252 1.502±0.00 0.298±0.00 1.199±0.00 0.564±0.41 0.208±0.00 0.917±0.38 0.300±0.19 2.702±0.00 0.047±0.00 1.081±0.67 0.218±0.00 0.446±0.14 1.578±0.60 1.557±0.05
ENST00000619232 0.709±0.00 N/A N/A 0.376±0.00 N/A N/A 0.197±0.00 0.272±0.00 0.247±0.00 N/A 0.068±0.00 0.662±0.00 1.305±0.00 5.839±4.43
ENST00000620444 N/A N/A N/A N/A 0.147±0.00 0.234±0.00 0.077±0.00 0.349±0.00 N/A 0.447±0.00 0.116±0.00 0.153±0.02 0.982±0.00 0.813±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000055639 ENSMUST00000069334 1.158±0.32 0.748±0.19 1.402±0.07 4.642±2.78 1.201±0.46 0.380±0.05 0.839±0.17 1.071±0.51 0.106±0.08 2.687±0.47 0.742±0.18 2.084±0.42 0.110±0.06 0.139±0.09
ENSMUST00000071533 0.699±0.29 0.544±0.02 0.697±0.16 1.998±1.10 0.439±0.18 0.314±0.12 0.514±0.10 1.263±0.23 0.066±0.06 1.617±0.27 0.400±0.00 1.184±0.60 N/A 0.158±0.01
ENSMUST00000156684 0.390±0.13 0.392±0.01 N/A N/A 0.712±0.12 0.311±0.02 0.398±0.00 0.861±0.37 0.027±0.00 2.034±0.19 N/A 2.132±1.08 0.018±0.00 0.068±0.00
ENSMUSG00000086133 ENSMUST00000144274 N/A N/A 0.023±0.00 0.104±0.03 N/A N/A N/A N/A N/A 0.258±0.05 0.044±0.00 0.080±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000003142 ENSDART00000018827 N/A N/A N/A 5.917±0.92 N/A N/A 4.372±1.65 3.200±0.28 0.074±0.00 N/A 1.633±0.00 N/A N/A N/A
ENSDART00000124561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000135617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000069440 ENSDART00000101070 N/A N/A N/A 5.560±0.00 N/A N/A 9.934±5.25 N/A 0.351±0.00 N/A 2.315±0.00 N/A N/A N/A
ENSDART00000140370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000095476 ENSDART00000132478 N/A N/A N/A 0.141±0.06 N/A N/A N/A 0.782±0.00 N/A N/A N/A N/A N/A N/A

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