C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 181
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000055850 Rnf181 10090 - 6:72359714-72362721 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000069580 Rnf181-001 72359714-72362432 protein_coding
  ENSMUST00000069595 Rnf181-003 72359714-72362393 protein_coding
  ENSMUST00000114095 Rnf181-009 72360288-72362382 protein_coding
  ENSMUST00000125554 Rnf181-007 72359872-72362360 nonsense_mediated_decay
  ENSMUST00000126065 Rnf181-005 72360278-72362363 nonsense_mediated_decay
  ENSMUST00000129233 Rnf181-006 72360277-72362390 nonsense_mediated_decay
  ENSMUST00000130064 Rnf181-010 72360084-72361396 protein_coding
  ENSMUST00000133978 Rnf181-004 72360613-72362428 retained_intron
  ENSMUST00000136707 Rnf181-011 72360418-72361067 retained_intron
  ENSMUST00000149296 Rnf181-012 72360251-72362344 nonsense_mediated_decay
  ENSMUST00000151063 Rnf181-013 72360336-72362365 nonsense_mediated_decay
  ENSMUST00000154098 Rnf181-002 72360245-72362721 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069580ENSMUST00000069595ENSMUST00000126065ENSMUST00000129233ENSMUST00000133978ENSMUST00000136707ENSMUST00000151063
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069580 28.148±3.14 73.576±7.99 32.302±0.11 17.517±2.45 19.394±5.10 24.922±1.98 15.272±1.52 67.546±2.30 28.179±3.53 46.013±3.12 18.118±2.81 35.895±10.18 59.122±20.87 4.004±0.00
ENSMUST00000069595 N/A N/A N/A N/A 11.287±0.00 N/A N/A N/A N/A N/A N/A 51.779±0.00 N/A N/A
ENSMUST00000126065 N/A 46.043±2.39 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 47.520±0.00
ENSMUST00000133978 N/A N/A N/A 11.520±0.00 N/A N/A N/A N/A N/A N/A N/A 25.414±0.00 N/A 12.102±0.00
ENSMUST00000136707 N/A 112.067±5.88 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151063 N/A 41.437±0.36 N/A N/A N/A 14.775±0.00 N/A N/A N/A N/A N/A 25.246±2.58 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0002 VISTA 6:71915186-72518828
CIL_00084P CIL_00084P_0002 VISTA 6:71915200-72518764
CIL_0009AX CIL_0009AX_0002 VISTA 6:72353769-72955984
CIL_0005JP CIL_0005JP_0002 CGP 6:72355447-72362721

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005575 ND cellular_component
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0051865 IEA protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023958 rnf181 ring finger protein 181 protein_coding Danio_rerio
ENSG00000168894 RNF181 ring finger protein 181 protein_coding Homo_sapiens

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