C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox B8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056648 Hoxb8 10090 + 11:96281905-96285315 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000052650 Hoxb8-001 96281905-96285315 protein_coding
  ENSMUST00000125410 Hoxb8-002 96282556-96284315 protein_coding
  ENSMUST00000168043 Hoxb8-201 96282725-96284693 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052650ENSMUST00000125410ENSMUST00000168043
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052650 0.908±0.25 16.738±6.17 2.432±0.00 1.463±1.42 0.195±0.06 0.884±0.54 0.014±0.00 8.324±3.75 0.040±0.02 0.053±0.02 0.118±0.05 1.600±0.84 0.097±0.06 0.228±0.26
ENSMUST00000125410 7.162±5.71 70.059±12.03 N/A 1.748±1.66 1.272±0.46 2.317±0.55 N/A 14.858±4.48 0.091±0.00 0.125±0.00 0.087±0.00 6.059±2.13 N/A 1.417±0.99
ENSMUST00000168043 2.431±0.49 35.473±5.70 N/A N/A 0.822±0.20 2.111±0.92 N/A 6.488±0.00 0.039±0.02 0.077±0.00 0.154±0.10 4.996±0.87 0.705±0.30 0.879±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579
CIL_0004H7 CIL_0004H7_0002 CGP 11:96271457-96285315
CIL_0004GM CIL_0004GM_0002 CGP 11:96281905-96290162

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007625 IMP grooming behavior
GO:0008344 IMP adult locomotory behavior
GO:0009952 IMP anterior/posterior pattern specification
GO:0019233 IMP sensory perception of pain
GO:0021516 IMP dorsal spinal cord development
GO:0043565 IEA sequence-specific DNA binding
GO:0045638 IDA negative regulation of myeloid cell differentiation
GO:0048704 IMP embryonic skeletal system morphogenesis
GO:0048705 IGI skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054025 hoxb8b homeo box B8b protein_coding Danio_rerio
ENSDARG00000056027 hoxb8a homeo box B8a protein_coding Danio_rerio
ENSG00000120068 HOXB8 homeobox B8 protein_coding Homo_sapiens

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