C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052650 Hoxb8-001 ENSMUSG00000056648 10090 + 11:96281905-96285315 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052650
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052650 0.908±0.25 16.738±6.17 2.432±0.00 1.463±1.42 0.195±0.06 0.884±0.54 0.014±0.00 8.324±3.75 0.040±0.02 0.053±0.02 0.118±0.05 1.600±0.84 0.097±0.06 0.228±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579
CIL_0004H7 CIL_0004H7_0002 CGP 11:96271457-96285315
CIL_0004GM CIL_0004GM_0002 CGP 11:96281905-96290162

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007625 IMP grooming behavior
GO:0008344 IMP adult locomotory behavior
GO:0009952 IMP anterior/posterior pattern specification
GO:0019233 IMP sensory perception of pain
GO:0021516 IMP dorsal spinal cord development
GO:0043565 IEA sequence-specific DNA binding
GO:0045638 IDA negative regulation of myeloid cell differentiation
GO:0048704 IMP embryonic skeletal system morphogenesis
GO:0048705 IGI skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000022441 dbx1a-201 protein_coding Danio_rerio 0.000000006 68
ENST00000222726 HOXA5-001 protein_coding Homo_sapiens 5e-23 113
ENST00000239144 HOXB8-001 protein_coding Homo_sapiens 0 2409
ENST00000498634 HOXB8-003 protein_coding Homo_sapiens 0 401
ENST00000520854 HOXA5-002 processed_transcript Homo_sapiens 9e-24 113
ENST00000576562 HOXB8-002 protein_coding Homo_sapiens 0 1158

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