C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: unc-13 homolog D (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000057948 Unc13d 10090 - 11:116062095-116077961 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000075036 Unc13d-201 116062096-116077961 protein_coding
  ENSMUST00000106450 Unc13d-001 116062095-116077750 protein_coding
  ENSMUST00000106451 Unc13d-202 116062096-116077961 protein_coding
  ENSMUST00000153408 Unc13d-005 116076108-116077051 protein_coding
  ENSMUST00000155120 Unc13d-002 116075397-116077961 processed_transcript
  ENSMUST00000156545 Unc13d-003 116076471-116077941 protein_coding
  ENSMUST00000173345 Unc13d-004 116062554-116077624 nonsense_mediated_decay
  ENSMUST00000173943 Unc13d-006 116068795-116070355 retained_intron
  ENSMUST00000174822 Unc13d-007 116062638-116077590 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075036ENSMUST00000106450ENSMUST00000106451ENSMUST00000155120ENSMUST00000174822
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075036 N/A N/A 0.592±0.00 0.174±0.12 N/A 1.220±0.00 0.119±0.01 0.181±0.00 0.045±0.01 N/A 0.174±0.15 N/A 1.152±0.00 N/A
ENSMUST00000106450 0.513±0.21 0.211±0.00 0.983±0.00 0.253±0.00 3.880±1.68 1.568±0.34 N/A 0.276±0.03 2.584±1.81 6.132±0.87 N/A 3.349±1.23 2.783±2.21 0.384±0.14
ENSMUST00000106451 1.567±0.14 0.166±0.00 1.354±0.13 0.102±0.00 2.825±0.74 2.586±0.56 0.263±0.00 0.281±0.10 2.760±2.70 10.452±2.42 0.090±0.06 3.723±2.92 1.985±1.02 0.803±0.08
ENSMUST00000155120 0.704±0.00 N/A N/A 0.823±0.23 N/A N/A 0.510±0.12 0.512±0.02 5.932±3.30 N/A 0.838±0.30 12.364±4.51 7.873±6.52 N/A
ENSMUST00000174822 0.367±0.24 0.248±0.08 N/A N/A 3.813±1.50 1.328±0.10 0.203±0.13 0.238±0.08 1.023±1.18 6.771±1.71 N/A 3.569±0.83 1.565±0.25 0.546±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0002 VISTA 11:116019003-116619995
CIL_00078S CIL_00078S_0002 CGP 11:116030322-116077961
CIL_00078T CIL_00078T_0002 CGP 11:116062095-116086995

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002432 IMP granuloma formation
GO:0002467 IMP germinal center formation
GO:0005515 IPI protein binding
GO:0005764 IEA lysosome
GO:0005768 IEA endosome
GO:0006909 IMP phagocytosis
GO:0016020 IEA membrane
GO:0017137 IEA Rab GTPase binding
GO:0033093 IEA Weibel-Palade body
GO:0043304 IEA regulation of mast cell degranulation
GO:0043320 IMP natural killer cell degranulation
GO:0045921 IEA positive regulation of exocytosis
GO:0051607 IMP defense response to virus
GO:0070382 IEA exocytic vesicle
GO:1903307 IEA positive regulation of regulated secretory pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078249 unc13d unc-13 homolog D (C. elegans) protein_coding Danio_rerio
ENSG00000092929 UNC13D unc-13 homolog D (C. elegans) protein_coding Homo_sapiens

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