C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: unc-13 homolog D (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075036 Unc13d-201 ENSMUSG00000057948 10090 - 11:116062096-116077961 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverMusclePlacentaENSMUST00000075036
Transcript ID Bladder Brain Colon Heart Kidney Liver Muscle Placenta
ENSMUST00000075036 0.592±0.00 0.174±0.12 1.220±0.00 0.119±0.01 0.181±0.00 0.045±0.01 0.174±0.15 1.152±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0002 VISTA 11:116019003-116619995
CIL_00078S CIL_00078S_0002 CGP 11:116030322-116077961
CIL_00078T CIL_00078T_0002 CGP 11:116062095-116086995

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002432 IMP granuloma formation
GO:0002467 IMP germinal center formation
GO:0005515 IPI protein binding
GO:0005764 IEA lysosome
GO:0005768 IEA endosome
GO:0006909 IMP phagocytosis
GO:0016020 IEA membrane
GO:0017137 IEA Rab GTPase binding
GO:0033093 IEA Weibel-Palade body
GO:0043304 IEA regulation of mast cell degranulation
GO:0043320 IMP natural killer cell degranulation
GO:0045921 IEA positive regulation of exocytosis
GO:0051607 IMP defense response to virus
GO:0070382 IEA exocytic vesicle
GO:1903307 IEA positive regulation of regulated secretory pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000207549 UNC13D-001 protein_coding Homo_sapiens 0 3496
ENST00000412096 UNC13D-004 protein_coding Homo_sapiens 0 3470
ENST00000585574 UNC13D-010 processed_transcript Homo_sapiens 0 496
ENST00000586108 UNC13D-006 protein_coding Homo_sapiens 0 547
ENST00000586147 UNC13D-009 protein_coding Homo_sapiens 3e-26 122
ENST00000587105 UNC13D-013 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000587495 UNC13D-011 retained_intron Homo_sapiens 2e-35 152
ENST00000587504 UNC13D-012 processed_transcript Homo_sapiens 0 745
ENST00000588774 UNC13D-007 retained_intron Homo_sapiens 1e-17 95
ENST00000589670 UNC13D-017 protein_coding Homo_sapiens 0 379
ENST00000590762 UNC13D-008 protein_coding Homo_sapiens 0 865
ENST00000590856 UNC13D-018 retained_intron Homo_sapiens 0 409
ENST00000591563 UNC13D-003 retained_intron Homo_sapiens 0 1600
ENST00000591616 UNC13D-014 retained_intron Homo_sapiens 0 534
ENST00000592386 UNC13D-016 protein_coding Homo_sapiens 0 961

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