C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitination factor E4A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000059890 Ube4a 10090 - 9:44923131-44965600 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000117506 Ube4a-003 44923131-44965560 protein_coding
  ENSMUST00000117549 Ube4a-005 44925848-44965600 protein_coding
  ENSMUST00000125642 Ube4a-007 44952949-44965554 protein_coding
  ENSMUST00000138559 Ube4a-002 44946055-44965557 retained_intron
  ENSMUST00000145657 Ube4a-001 44933071-44965525 nonsense_mediated_decay
  ENSMUST00000154287 Ube4a-004 44932971-44965519 nonsense_mediated_decay
  ENSMUST00000155400 Ube4a-006 44956295-44965536 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117506ENSMUST00000117549
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117506 3.940±1.88 2.892±1.18 1.668±0.00 2.006±0.16 2.246±1.12 1.995±0.89 0.921±0.00 3.136±1.45 3.732±1.68 2.345±0.49 1.055±0.05 1.610±0.57 4.823±1.93 3.616±0.68
ENSMUST00000117549 3.040±0.98 2.315±0.39 N/A 2.469±0.00 4.430±0.70 3.000±0.61 1.413±0.31 2.484±0.55 2.502±0.85 2.911±1.21 N/A 3.857±1.20 6.862±2.61 3.007±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081E CIL_00081E_0002 VISTA 9:44577224-45180192

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000151 IEA ubiquitin ligase complex
GO:0000209 IDA protein polyubiquitination
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0034450 IDA ubiquitin-ubiquitin ligase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040571 ube4a ubiquitination factor E4A (UFD2 homolog, yeast) protein_coding Danio_rerio
ENSG00000110344 UBE4A ubiquitination factor E4A protein_coding Homo_sapiens

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