C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: general transcription factor II I
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000060261 Gtf2i 10090 - 5:134237834-134314760 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000059042 Gtf2i-001 134237834-134314760 protein_coding
  ENSMUST00000082057 Gtf2i-201 134237837-134314746 protein_coding
  ENSMUST00000111261 Gtf2i-202 134237837-134314746 protein_coding
  ENSMUST00000172553 Gtf2i-023 134238843-134242411 retained_intron
  ENSMUST00000172600 Gtf2i-021 134242752-134243744 retained_intron
  ENSMUST00000172715 Gtf2i-008 134239513-134295608 protein_coding
  ENSMUST00000172904 Gtf2i-009 134237843-134279865 processed_transcript
  ENSMUST00000172953 Gtf2i-019 134259251-134265792 processed_transcript
  ENSMUST00000173263 Gtf2i-012 134287020-134314727 nonsense_mediated_decay
  ENSMUST00000173341 Gtf2i-002 134237839-134314720 protein_coding
  ENSMUST00000173485 Gtf2i-022 134238497-134243562 protein_coding
  ENSMUST00000173504 Gtf2i-015 134286966-134314676 protein_coding
  ENSMUST00000173509 Gtf2i-024 134239655-134241045 retained_intron
  ENSMUST00000173651 Gtf2i-013 134293746-134312022 protein_coding
  ENSMUST00000173887 Gtf2i-018 134263709-134275043 processed_transcript
  ENSMUST00000173888 Gtf2i-017 134239513-134295608 protein_coding
  ENSMUST00000174003 Gtf2i-020 134240637-134244752 retained_intron
  ENSMUST00000174133 Gtf2i-025 134255886-134289370 protein_coding
  ENSMUST00000174155 Gtf2i-003 134237843-134314693 protein_coding
  ENSMUST00000174182 Gtf2i-016 134255860-134272637 retained_intron
  ENSMUST00000174188 Gtf2i-014 134286940-134311727 protein_coding
  ENSMUST00000174354 Gtf2i-004 134237843-134314693 protein_coding
  ENSMUST00000174513 Gtf2i-005 134237843-134314693 protein_coding
  ENSMUST00000174772 Gtf2i-006 134237843-134314693 protein_coding
  ENSMUST00000174773 Gtf2i-010 134289226-134295687 retained_intron
  ENSMUST00000174867 Gtf2i-011 134286909-134314378 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000111261ENSMUST00000172715ENSMUST00000172904ENSMUST00000173263ENSMUST00000173341ENSMUST00000173888ENSMUST00000174133ENSMUST00000174155ENSMUST00000174354ENSMUST00000174513ENSMUST00000174773
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111261 5.632±1.06 N/A 24.877±0.56 15.310±0.09 4.518±1.15 4.033±1.20 5.298±0.80 7.118±0.82 4.085±1.89 6.483±0.62 8.704±1.85 10.062±2.77 2.811±0.38 10.108±1.09
ENSMUST00000172715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.165±2.87 N/A N/A
ENSMUST00000172904 8.559±1.63 N/A N/A N/A N/A N/A N/A N/A 4.438±0.82 N/A 7.074±0.75 12.628±2.23 3.099±1.46 N/A
ENSMUST00000173263 N/A 45.084±5.62 N/A N/A 11.687±2.17 N/A N/A N/A N/A N/A N/A 19.275±0.75 N/A N/A
ENSMUST00000173341 7.964±1.38 N/A N/A 15.030±0.33 4.662±1.34 4.648±1.41 9.291±0.66 10.613±0.80 5.346±2.19 7.561±1.14 7.370±1.01 8.964±1.91 4.370±2.56 5.459±0.72
ENSMUST00000173888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.762±0.00 N/A
ENSMUST00000174133 N/A N/A N/A 50.045±0.00 N/A N/A N/A N/A N/A N/A N/A 60.525±0.00 6.441±0.00 N/A
ENSMUST00000174155 N/A N/A N/A 11.640±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174354 N/A N/A N/A 19.032±11.84 N/A N/A N/A N/A 3.953±0.00 N/A 6.078±0.00 39.437±0.06 3.572±0.99 10.479±6.36
ENSMUST00000174513 N/A N/A 10.804±0.30 N/A N/A N/A N/A N/A N/A N/A 5.402±1.84 N/A N/A N/A
ENSMUST00000174773 N/A N/A N/A 102.782±0.00 N/A N/A N/A N/A N/A N/A N/A 128.806±0.00 16.832±0.02 137.250±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0014886 IDA transition between slow and fast fiber
GO:0016020 IEA membrane
GO:0016525 IEA negative regulation of angiogenesis
GO:0042995 IDA cell projection
GO:0043025 IDA neuronal cell body
GO:0051019 IDA mitogen-activated protein kinase binding
GO:0051481 IEA negative regulation of cytosolic calcium ion concentration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022203 gtf2ird1 GTF2I repeat domain-containing 1 protein_coding Danio_rerio
ENSG00000263001 GTF2I general transcription factor IIi protein_coding Homo_sapiens

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