C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: limbic system-associated membrane protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000061080 Lsamp 10090 + 16:39984361-42181679 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000078873 Lsamp-001 41532858-42146213 protein_coding
  ENSMUST00000099761 Lsamp-002 41533037-42181679 protein_coding
  ENSMUST00000133853 Lsamp-004 42144025-42174283 protein_coding
  ENSMUST00000145951 Lsamp-003 42143984-42174458 protein_coding
  ENSMUST00000187185 Lsamp-010 41533419-41539253 protein_coding
  ENSMUST00000187695 Lsamp-005 39984371-42176295 protein_coding
  ENSMUST00000189229 Lsamp-009 39984361-40979709 protein_coding
  ENSMUST00000189358 Lsamp-007 39984386-41209395 protein_coding
  ENSMUST00000189829 Lsamp-008 39984595-40657886 processed_transcript
  ENSMUST00000191610 Lsamp-006 39984386-41409552 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078873ENSMUST00000099761ENSMUST00000133853ENSMUST00000145951ENSMUST00000187695ENSMUST00000189229ENSMUST00000189358ENSMUST00000189829ENSMUST00000191610
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078873 1.910±1.57 0.697±0.37 N/A N/A 0.548±0.21 0.367±0.17 0.377±0.02 0.122±0.00 0.026±0.00 0.214±0.12 N/A 1.484±0.55 0.037±0.00 0.049±0.03
ENSMUST00000099761 0.834±0.82 0.382±0.14 1.333±0.33 7.866±2.28 0.256±0.11 0.116±0.06 0.160±0.06 0.120±0.03 0.020±0.01 0.096±0.03 0.036±0.01 0.236±0.04 0.009±0.00 0.020±0.00
ENSMUST00000133853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.900±0.00 N/A N/A
ENSMUST00000145951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.407±0.00 N/A 0.167±0.02
ENSMUST00000187695 1.066±1.06 0.218±0.04 0.899±0.00 N/A 0.478±0.23 0.094±0.00 0.314±0.14 0.094±0.03 0.070±0.03 0.145±0.00 0.043±0.02 0.777±0.36 0.011±0.01 0.033±0.01
ENSMUST00000189229 N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A N/A N/A N/A
ENSMUST00000189358 N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 0.088±0.00 N/A N/A N/A N/A N/A
ENSMUST00000189829 N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.01 N/A N/A N/A N/A N/A
ENSMUST00000191610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0031225 IEA anchored component of membrane
GO:0035641 IMP locomotory exploration behavior

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091309 LSAMP limbic system-associated membrane protein protein_coding Danio_rerio
ENSG00000185565 LSAMP limbic system-associated membrane protein protein_coding Homo_sapiens

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