C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: limbic system-associated membrane protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000185565 LSAMP 9606 - 3:115802363-117139389 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000333617 LSAMP-002 115809794-116444983 protein_coding
  ENST00000473171 LSAMP-004 115841571-115852578 retained_intron
  ENST00000474851 LSAMP-006 116019515-117139389 protein_coding
  ENST00000475403 LSAMP-005 115810276-115842497 processed_transcript
  ENST00000490035 LSAMP-001 115802388-116445531 protein_coding
  ENST00000498645 LSAMP-003 115841887-116051252 processed_transcript
  ENST00000539563 LSAMP-201 115802363-116086561 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000333617ENST00000474851ENST00000490035ENST00000498645ENST00000539563
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000333617 N/A N/A 0.190±0.00 N/A N/A N/A N/A N/A N/A N/A 0.053±0.00 N/A 0.745±0.03 N/A
ENST00000474851 N/A N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A N/A N/A N/A N/A
ENST00000490035 0.135±0.00 0.230±0.00 N/A 6.107±0.85 0.706±0.53 1.663±0.76 0.429±0.18 0.291±0.00 N/A 1.020±0.20 N/A 0.477±0.11 0.320±0.12 N/A
ENST00000498645 N/A N/A N/A N/A 5.248±0.00 N/A 3.703±0.00 1.210±0.00 N/A N/A N/A N/A 0.896±0.00 N/A
ENST00000539563 0.054±0.00 0.151±0.00 N/A 13.300±5.77 N/A 2.702±0.00 0.263±0.06 0.302±0.28 N/A 2.829±0.00 N/A 0.430±0.00 N/A 1.470±1.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000L7 CIL_0000L7_0002 CGP 3:115623324-117139389

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007399 TAS nervous system development
GO:0031225 IEA anchored component of membrane
GO:0035641 IEA locomotory exploration behavior

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091309 LSAMP limbic system-associated membrane protein protein_coding Danio_rerio
ENSMUSG00000061080 Lsamp limbic system-associated membrane protein protein_coding Mus_musculus

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