C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: limbic system-associated membrane protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078873 Lsamp-001 ENSMUSG00000061080 10090 + 16:41532858-42146213 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000078873
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000078873 1.910±1.57 0.697±0.37 0.548±0.21 0.367±0.17 0.377±0.02 0.122±0.00 0.026±0.00 0.214±0.12 1.484±0.55 0.037±0.00 0.049±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0031225 IEA anchored component of membrane
GO:0035641 IMP locomotory exploration behavior

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000333617 LSAMP-002 protein_coding Homo_sapiens 0 1338
ENST00000473171 LSAMP-004 retained_intron Homo_sapiens 0 577
ENST00000474851 LSAMP-006 protein_coding Homo_sapiens 0 684
ENST00000475403 LSAMP-005 processed_transcript Homo_sapiens 0 289
ENST00000490035 LSAMP-001 protein_coding Homo_sapiens 0 1555
ENST00000498645 LSAMP-003 processed_transcript Homo_sapiens 0 736
ENST00000539563 LSAMP-201 protein_coding Homo_sapiens 0 1171

Loading