C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RB-associated KRAB repressor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000061898 Rbak 10090 - 5:143172186-143180775 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000049861 Rbak-201 143172188-143180743 protein_coding
  ENSMUST00000164068 Rbak-002 143173229-143180730 protein_coding
  ENSMUST00000165318 Rbak-001 143172186-143180775 protein_coding
  ENSMUST00000166382 Rbak-003 143172187-143176734 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049861ENSMUST00000164068ENSMUST00000165318ENSMUST00000166382
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049861 1.202±0.65 1.764±0.98 1.596±0.27 1.669±0.31 1.345±0.43 1.333±0.49 0.395±0.19 0.527±0.14 0.344±0.17 2.169±0.03 0.624±0.33 2.498±0.71 0.646±0.28 0.227±0.14
ENSMUST00000164068 1.224±0.39 1.024±0.42 N/A 1.622±0.00 1.470±0.60 0.529±0.14 0.548±0.12 0.407±0.12 0.293±0.08 0.765±0.07 0.404±0.07 1.495±0.64 0.586±0.09 0.359±0.14
ENSMUST00000165318 N/A 0.663±0.23 N/A N/A 0.329±0.01 0.362±0.04 N/A 0.166±0.00 0.243±0.09 0.503±0.21 N/A 0.630±0.00 0.396±0.13 N/A
ENSMUST00000166382 1.387±0.26 0.461±0.05 1.677±0.01 1.047±0.08 0.904±0.72 0.600±0.20 0.423±0.19 0.451±0.10 0.357±0.23 1.422±0.72 0.709±0.28 2.010±1.18 0.927±0.36 0.483±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0002 VISTA 5:142700569-143309825

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000146587 RBAK RB-associated KRAB zinc finger protein_coding Homo_sapiens

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