C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RB-associated KRAB repressor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165318 Rbak-001 ENSMUSG00000061898 10090 - 5:143172186-143180775 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryPlacentaENSMUST00000165318
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000165318 0.663±0.23 0.329±0.01 0.362±0.04 0.166±0.00 0.243±0.09 0.503±0.21 0.630±0.00 0.396±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0002 VISTA 5:142700569-143309825

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296682 PRDM9-001 protein_coding Homo_sapiens 2e-24 119
ENST00000314011 ZNF436-001 protein_coding Homo_sapiens 0.00007 55
ENST00000325921 PRDM7-001 retained_intron Homo_sapiens 0.000000006 68
ENST00000340911 ZNF169-001 protein_coding Homo_sapiens 2e-17 95
ENST00000342651 ZNF12-003 protein_coding Homo_sapiens 0 614
ENST00000353796 RBAK-001 protein_coding Homo_sapiens 0 1480
ENST00000360729 ZNF567-002 protein_coding Homo_sapiens 5e-25 121
ENST00000374227 ZFP37-001 protein_coding Homo_sapiens 2e-17 97
ENST00000374608 ZNF436-003 protein_coding Homo_sapiens 0.00007 55
ENST00000377073 ZNF157-001 protein_coding Homo_sapiens 5e-29 134
ENST00000395395 ZNF169-003 protein_coding Homo_sapiens 2e-17 95
ENST00000396904 RBAK-RBAKDN-002 protein_coding Homo_sapiens 0 211
ENST00000396912 RBAK-201 protein_coding Homo_sapiens 0 1480
ENST00000404360 ZNF12-002 protein_coding Homo_sapiens 0 614
ENST00000405858 ZNF12-001 protein_coding Homo_sapiens 0 614
ENST00000407184 RBAK-RBAKDN-001 protein_coding Homo_sapiens 0 211
ENST00000449207 PRDM7-002 protein_coding Homo_sapiens 0.000000005 68
ENST00000476992 RBAK-002 retained_intron Homo_sapiens 0 196
ENST00000536254 ZNF567-001 protein_coding Homo_sapiens 5e-25 121
ENST00000553380 ZFP37-002 protein_coding Homo_sapiens 6e-18 97
ENST00000555206 ZFP37-003 protein_coding Homo_sapiens 7e-18 97
ENST00000585696 ZNF567-004 protein_coding Homo_sapiens 7e-25 121
ENST00000588311 ZNF567-003 protein_coding Homo_sapiens 4e-25 121

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