C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CD209b antigen
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000065987 Cd209b 10090 - 8:3917655-3926844 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000084086 Cd209b-002 3917657-3926833 protein_coding
  ENSMUST00000111014 Cd209b-001 3917655-3926844 nonsense_mediated_decay
  ENSMUST00000171635 Cd209b-003 3918606-3926833 protein_coding
  ENSMUST00000188386 Cd209b-004 3918677-3926813 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084086ENSMUST00000111014ENSMUST00000171635ENSMUST00000188386
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084086 2.752±0.60 0.375±0.21 1.392±0.23 N/A 30.800±11.36 0.596±0.13 0.106±0.01 2.946±2.24 0.109±0.07 0.323±0.12 1.514±1.83 0.330±0.11 0.360±0.00 0.059±0.02
ENSMUST00000111014 0.649±0.00 0.166±0.11 N/A 0.004±0.00 N/A 0.073±0.00 0.100±0.04 0.171±0.00 0.060±0.04 0.587±0.00 0.172±0.09 0.176±0.08 N/A 0.018±0.00
ENSMUST00000171635 N/A 0.094±0.00 0.483±0.00 0.007±0.00 N/A 0.109±0.04 0.132±0.00 0.037±0.00 N/A N/A 0.130±0.00 0.399±0.12 N/A 0.039±0.00
ENSMUST00000188386 N/A N/A N/A 0.017±0.00 N/A 0.103±0.00 N/A N/A 0.033±0.00 N/A 0.118±0.00 0.220±0.09 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VX CIL_0002VX_0002 CGP 8:3871827-3926844

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001872 IDA (1->3)-beta-D-glucan binding
GO:0001879 IDA detection of yeast
GO:0005537 IDA mannose binding
GO:0006897 IDA endocytosis
GO:0006910 IDA phagocytosis, recognition
GO:0009897 IDA external side of plasma membrane
GO:0016021 TAS integral component of membrane
GO:0016045 IDA detection of bacterium
GO:0030247 IDA polysaccharide binding
GO:0042535 IDA positive regulation of tumor necrosis factor biosynthetic process
GO:0046872 IEA metal ion binding
GO:0050766 IDA positive regulation of phagocytosis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000090659 CD209 CD209 molecule protein_coding Homo_sapiens
ENSG00000104938 CLEC4M C-type lectin domain family 4, member M protein_coding Homo_sapiens

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