C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C-type lectin domain family 4, member M
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104938 CLEC4M 9606 + 19:7763149-7769605 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000248228 CLEC4M-201 7763149-7769604 protein_coding
  ENST00000327325 CLEC4M-001 7763149-7769605 protein_coding
  ENST00000334806 CLEC4M-202 7763149-7769604 protein_coding
  ENST00000359059 CLEC4M-203 7763149-7769604 protein_coding
  ENST00000394122 CLEC4M-204 7763149-7769604 protein_coding
  ENST00000595496 CLEC4M-006 7763267-7768988 protein_coding
  ENST00000595751 CLEC4M-008 7763244-7766802 protein_coding
  ENST00000596363 CLEC4M-004 7763217-7769604 protein_coding
  ENST00000596707 CLEC4M-003 7763267-7768988 protein_coding
  ENST00000597522 CLEC4M-005 7763267-7768988 protein_coding
  ENST00000598879 CLEC4M-010 7763267-7768988 retained_intron
  ENST00000599333 CLEC4M-011 7763267-7768988 retained_intron
  ENST00000601089 CLEC4M-002 7763262-7768575 retained_intron
  ENST00000602143 CLEC4M-007 7766594-7769118 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000248228ENST00000327325ENST00000334806ENST00000359059ENST00000595751ENST00000596363ENST00000597522ENST00000598879ENST00000601089ENST00000602143
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000248228 N/A 29.055±0.00 N/A N/A N/A N/A N/A 9.538±0.00 6.497±5.70 1.575±0.00 N/A 0.526±0.43 2.839±1.80 0.442±0.00
ENST00000327325 N/A N/A N/A N/A N/A N/A N/A N/A 1.099±0.00 N/A N/A N/A N/A N/A
ENST00000334806 N/A 24.494±0.00 N/A N/A N/A N/A N/A N/A 10.038±0.00 N/A N/A 1.036±0.24 3.411±0.00 0.745±0.38
ENST00000359059 0.114±0.00 N/A N/A 0.094±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.351±0.00
ENST00000595751 N/A N/A N/A N/A N/A N/A 0.029±0.00 6.311±0.00 N/A 0.814±0.00 N/A N/A N/A N/A
ENST00000596363 N/A N/A N/A N/A 0.076±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.393±0.00 N/A N/A
ENST00000598879 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.315±0.00 N/A N/A N/A N/A
ENST00000601089 0.077±0.00 N/A 0.016±0.00 0.070±0.06 0.019±0.00 0.068±0.00 0.031±0.00 0.043±0.00 N/A 0.087±0.00 0.005±0.00 0.053±0.00 N/A 0.183±0.00
ENST00000602143 N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A 0.978±0.00 N/A 0.344±0.00 4.176±1.95 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VX CIL_0002VX_0001 CGP 19:7739994-7769605

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 NAS receptor activity
GO:0005537 IEA mannose binding
GO:0005576 IEA extracellular region
GO:0005737 NAS cytoplasm
GO:0005887 TAS integral component of plasma membrane
GO:0006897 IEA endocytosis
GO:0007159 NAS leukocyte cell-cell adhesion
GO:0009988 TAS cell-cell recognition
GO:0010468 IMP regulation of gene expression
GO:0016020 TAS membrane
GO:0019048 TAS modulation by virus of host morphology or physiology
GO:0019062 TAS virion attachment to host cell
GO:0019079 NAS viral genome replication
GO:0019882 NAS antigen processing and presentation
GO:0030193 IMP regulation of blood coagulation
GO:0030246 IEA:NAS carbohydrate binding
GO:0030369 NAS ICAM-3 receptor activity
GO:0035556 NAS intracellular signal transduction
GO:0042605 NAS peptide antigen binding
GO:0045087 IEA innate immune response
GO:0046790 TAS virion binding
GO:0046872 IEA metal ion binding
GO:0046968 NAS peptide antigen transport
GO:0075733 TAS intracellular transport of virus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000031495 Cd209d CD209d antigen protein_coding Mus_musculus
ENSMUSG00000040197 Cd209e CD209e antigen protein_coding Mus_musculus
ENSMUSG00000065987 Cd209b CD209b antigen protein_coding Mus_musculus

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