C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AT rich interactive domain 3C (BRIGHT-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000066224 Arid3c 10090 - 4:41723836-41731142 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000084698 Arid3c-001 41724139-41730286 protein_coding
  ENSMUST00000150809 Arid3c-002 41724139-41730286 protein_coding
  ENSMUST00000159930 Arid3c-003 41729926-41731142 protein_coding
  ENSMUST00000171251 Arid3c-201 41723836-41731142 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000084698ENSMUST00000150809ENSMUST00000159930ENSMUST00000171251
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000084698 N/A N/A 0.165±0.00 N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A
ENSMUST00000150809 0.027±0.00 N/A N/A 0.037±0.01 0.033±0.00 N/A N/A 0.017±0.00 N/A 0.103±0.03 0.037±0.00 0.041±0.00
ENSMUST00000159930 N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A 0.302±0.00 N/A N/A
ENSMUST00000171251 N/A 0.419±0.00 0.199±0.04 N/A N/A 0.016±0.00 0.030±0.00 0.007±0.00 0.032±0.00 0.076±0.02 0.045±0.04 0.100±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003GW CIL_0003GW_0002 CGP 4:41714798-41731142
CIL_0005SN CIL_0005SN_0002 CGP 4:41723836-41756157

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0045121 IEA membrane raft
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067729 ARID3C AT rich interactive domain 3C (BRIGHT-like) protein_coding Danio_rerio
ENSG00000205143 ARID3C AT rich interactive domain 3C (BRIGHT-like) protein_coding Homo_sapiens

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