C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cyclic nucleotide gated channel alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000067220 Cnga1 10090 - 5:72603696-72642752 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087213 Cnga1-001 72603696-72642752 protein_coding
  ENSMUST00000126799 Cnga1-002 72615134-72637842 retained_intron
  ENSMUST00000135701 Cnga1-003 72619029-72630937 protein_coding
  ENSMUST00000169997 Cnga1-201 72604115-72637846 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087213ENSMUST00000126799ENSMUST00000135701ENSMUST00000169997
Transcript ID Bladder Brain Breast Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087213 0.003±0.00 N/A 0.096±0.05 N/A 0.028±0.02 N/A N/A 0.182±0.05 0.010±0.00 0.056±0.02
ENSMUST00000126799 N/A N/A N/A N/A 0.003±0.00 N/A N/A N/A N/A N/A
ENSMUST00000135701 N/A N/A N/A N/A N/A N/A N/A N/A 2.657±0.00 N/A
ENSMUST00000169997 N/A 0.003±0.00 0.067±0.04 0.020±0.00 0.005±0.00 0.086±0.05 0.025±0.01 0.079±0.00 0.036±0.00 0.044±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RD CIL_0008RD_0002 VISTA 5:72193972-72795406

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001750 IDA photoreceptor outer segment
GO:0005222 IBA intracellular cAMP activated cation channel activity
GO:0005223 IBA intracellular cGMP activated cation channel activity
GO:0005249 IBA voltage-gated potassium channel activity
GO:0005515 IEA protein binding
GO:0005887 IBA integral component of plasma membrane
GO:0007601 IEA visual perception
GO:0007603 IBA phototransduction, visible light
GO:0016020 IDA membrane
GO:0030553 IBA cGMP binding
GO:0042391 IBA regulation of membrane potential
GO:0042622 IDA photoreceptor outer segment membrane
GO:0071805 IBA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012125 cnga1 cyclic nucleotide gated channel alpha 1 protein_coding Danio_rerio
ENSDARG00000029898 CNGA1 (2 of 2) cyclic nucleotide gated channel alpha 1 protein_coding Danio_rerio
ENSG00000198515 CNGA1 cyclic nucleotide gated channel alpha 1 protein_coding Homo_sapiens

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