C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cyclic nucleotide gated channel alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198515 CNGA1 9606 - 4:47935977-48016672 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000358519 CNGA1-201 47935979-47981502 protein_coding
  ENST00000402813 CNGA1-001 47935977-47981535 protein_coding
  ENST00000420489 CNGA1-007 47936014-48012944 protein_coding
  ENST00000504722 CNGA1-008 47943245-48012944 protein_coding
  ENST00000506118 CNGA1-004 47942917-47952689 retained_intron
  ENST00000513178 CNGA1-005 47949835-48016672 protein_coding
  ENST00000514170 CNGA1-006 47935977-48016592 protein_coding
  ENST00000514520 CNGA1-009 47949833-47952807 protein_coding
  ENST00000544810 CNGA1-202 47935979-47971100 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358519ENST00000402813ENST00000420489ENST00000504722ENST00000506118ENST00000514170ENST00000514520ENST00000544810
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358519 0.525±0.00 N/A N/A 0.016±0.00 N/A N/A 0.005±0.00 1.293±0.00 0.330±0.00 0.185±0.00 0.148±0.00 N/A 0.315±0.24 N/A
ENST00000402813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A 0.067±0.00
ENST00000420489 N/A N/A 0.017±0.00 N/A N/A 0.295±0.00 N/A N/A N/A N/A N/A N/A 0.103±0.02 N/A
ENST00000504722 N/A N/A N/A N/A N/A 0.648±0.00 N/A N/A N/A 0.194±0.00 N/A N/A N/A N/A
ENST00000506118 N/A N/A 0.012±0.00 N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A 0.469±0.38 N/A
ENST00000514170 N/A N/A N/A N/A 0.134±0.00 N/A N/A 0.730±0.09 0.440±0.32 N/A N/A 0.383±0.10 N/A 0.069±0.02
ENST00000514520 N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000544810 0.838±0.00 0.186±0.00 N/A 0.075±0.00 0.676±0.00 N/A 0.009±0.00 N/A N/A N/A N/A N/A 0.105±0.00 0.140±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RD CIL_0008RD_0001 VISTA 4:47524449-48126035

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001750 IEA photoreceptor outer segment
GO:0005216 IEA ion channel activity
GO:0005222 IBA intracellular cAMP activated cation channel activity
GO:0005223 IBA intracellular cGMP activated cation channel activity
GO:0005249 IBA voltage-gated potassium channel activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006811 IEA ion transport
GO:0007601 IEA visual perception
GO:0007603 TAS phototransduction, visible light
GO:0016020 IEA membrane
GO:0016056 TAS rhodopsin mediated signaling pathway
GO:0022400 TAS regulation of rhodopsin mediated signaling pathway
GO:0030553 IBA cGMP binding
GO:0042391 IBA regulation of membrane potential
GO:0042622 IEA photoreceptor outer segment membrane
GO:0055085 IEA transmembrane transport
GO:0071805 IBA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012125 cnga1 cyclic nucleotide gated channel alpha 1 protein_coding Danio_rerio
ENSDARG00000029898 CNGA1 (2 of 2) cyclic nucleotide gated channel alpha 1 protein_coding Danio_rerio
ENSMUSG00000067220 Cnga1 cyclic nucleotide gated channel alpha 1 protein_coding Mus_musculus

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