C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclic nucleotide gated channel alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087213 Cnga1-001 ENSMUSG00000067220 10090 - 5:72603696-72642752 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastLiverOvaryPlacentaTestisENSMUST00000087213
Transcript ID Bladder Breast Liver Ovary Placenta Testis
ENSMUST00000087213 0.003±0.00 0.096±0.05 0.028±0.02 0.182±0.05 0.010±0.00 0.056±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RD CIL_0008RD_0002 VISTA 5:72193972-72795406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001750 IDA photoreceptor outer segment
GO:0005222 IBA intracellular cAMP activated cation channel activity
GO:0005223 IBA intracellular cGMP activated cation channel activity
GO:0005249 IBA voltage-gated potassium channel activity
GO:0005515 IEA protein binding
GO:0005887 IBA integral component of plasma membrane
GO:0007601 IEA visual perception
GO:0007603 IBA phototransduction, visible light
GO:0016020 IDA membrane
GO:0030553 IBA cGMP binding
GO:0042391 IBA regulation of membrane potential
GO:0042622 IDA photoreceptor outer segment membrane
GO:0071805 IBA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358519 CNGA1-201 protein_coding Homo_sapiens 0 2344
ENST00000402813 CNGA1-001 protein_coding Homo_sapiens 0 2313
ENST00000420489 CNGA1-007 protein_coding Homo_sapiens 0 2344
ENST00000514170 CNGA1-006 protein_coding Homo_sapiens 0 2344
ENST00000544810 CNGA1-202 protein_coding Homo_sapiens 0 2313

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