C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000068740 Celsr2 10090 - 3:108390851-108415552 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000090558 Celsr2-001 108390851-108415552 protein_coding
  ENSMUST00000126349 Celsr2-004 108395560-108396493 processed_transcript
  ENSMUST00000126935 Celsr2-006 108392600-108393524 processed_transcript
  ENSMUST00000130941 Celsr2-005 108393535-108394302 processed_transcript
  ENSMUST00000133216 Celsr2-007 108392379-108393433 processed_transcript
  ENSMUST00000147251 Celsr2-002 108392222-108398951 protein_coding
  ENSMUST00000147565 Celsr2-003 108401260-108402589 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090558ENSMUST00000126935ENSMUST00000147251ENSMUST00000147565
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090558 1.534±0.10 1.010±0.76 N/A 12.982±2.78 3.010±1.53 0.433±0.11 0.287±0.12 4.597±1.74 0.077±0.02 1.110±0.49 0.922±0.36 1.777±0.78 0.059±0.01 1.766±0.88
ENSMUST00000126935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.195±0.00 N/A
ENSMUST00000147251 0.441±0.09 1.195±0.40 0.923±0.00 8.489±1.26 4.438±1.01 0.743±0.21 0.418±0.11 6.034±0.43 0.077±0.05 2.226±0.65 0.847±0.00 3.838±1.04 0.086±0.00 2.751±0.71
ENSMUST00000147565 N/A N/A N/A N/A N/A N/A N/A N/A 0.282±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099A CIL_00099A_0002 VISTA 3:108089934-108692442
CIL_00098X CIL_00098X_0002 VISTA 3:108109603-108712500

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001764 IMP neuron migration
GO:0003341 IMP cilium movement
GO:0004930 IEA G-protein coupled receptor activity
GO:0005509 IEA calcium ion binding
GO:0005886 ISO plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007218 IEA neuropeptide signaling pathway
GO:0016021 IEA integral component of membrane
GO:0021591 IMP ventricular system development
GO:0032880 IGI regulation of protein localization
GO:0033326 IGI cerebrospinal fluid secretion
GO:0042384 IGI cilium assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019726 celsr2 cadherin, EGF LAG seven-pass G-type receptor 2 protein_coding Danio_rerio
ENSDARG00000088231 CELSR2 (2 of 2) cadherin, EGF LAG seven-pass G-type receptor 2 protein_coding Danio_rerio
ENSG00000143126 CELSR2 cadherin, EGF LAG seven-pass G-type receptor 2 protein_coding Homo_sapiens

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