C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090558 Celsr2-001 ENSMUSG00000068740 10090 - 3:108390851-108415552 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090558
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090558 1.534±0.10 1.010±0.76 12.982±2.78 3.010±1.53 0.433±0.11 0.287±0.12 4.597±1.74 0.077±0.02 1.110±0.49 0.922±0.36 1.777±0.78 0.059±0.01 1.766±0.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099A CIL_00099A_0002 VISTA 3:108089934-108692442
CIL_00098X CIL_00098X_0002 VISTA 3:108109603-108712500

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IMP neuron migration
GO:0003341 IMP cilium movement
GO:0004930 IEA G-protein coupled receptor activity
GO:0005509 IEA calcium ion binding
GO:0005886 ISO plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007218 IEA neuropeptide signaling pathway
GO:0016021 IEA integral component of membrane
GO:0021591 IMP ventricular system development
GO:0032880 IGI regulation of protein localization
GO:0033326 IGI cerebrospinal fluid secretion
GO:0042384 IGI cilium assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000271332 CELSR2-001 protein_coding Homo_sapiens 0 10830
ENST00000459940 CELSR2-005 processed_transcript Homo_sapiens 0 455
ENST00000489018 CELSR2-002 processed_transcript Homo_sapiens 0 861
ENST00000498157 CELSR2-003 processed_transcript Homo_sapiens 0 560

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