C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polycomb group ring finger 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000069678 Pcgf1 10090 + 6:83077869-83080855 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000092614 Pcgf1-201 83078390-83080847 protein_coding
  ENSMUST00000165164 Pcgf1-001 83078346-83080855 protein_coding
  ENSMUST00000176027 Pcgf1-005 83078630-83080757 nonsense_mediated_decay
  ENSMUST00000176089 Pcgf1-006 83078691-83080757 protein_coding
  ENSMUST00000176100 Pcgf1-003 83077869-83078995 protein_coding
  ENSMUST00000176372 Pcgf1-004 83080020-83080854 retained_intron
  ENSMUST00000177177 Pcgf1-002 83078630-83080854 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000092614ENSMUST00000165164ENSMUST00000176027ENSMUST00000176100ENSMUST00000177177
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000092614 N/A 5.384±0.00 N/A N/A 3.735±0.30 N/A N/A N/A 1.032±0.33 N/A 2.671±0.70 7.927±4.65 3.672±1.01 N/A
ENSMUST00000165164 6.413±2.08 3.898±0.60 11.660±1.79 13.555±2.89 4.485±1.08 4.685±0.96 3.740±1.03 6.285±0.77 6.993±5.43 5.418±0.63 2.887±0.77 7.156±3.62 7.470±2.35 14.093±1.27
ENSMUST00000176027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.606±0.00 N/A N/A N/A
ENSMUST00000176100 N/A 4.282±1.38 N/A N/A 1.072±0.00 1.289±0.17 N/A N/A 0.502±0.00 N/A N/A 1.861±0.23 N/A 7.878±1.38
ENSMUST00000177177 N/A N/A N/A N/A 4.913±0.00 N/A N/A N/A 1.614±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008022 IEA protein C-terminus binding
GO:0008270 IEA zinc ion binding
GO:0031519 ISS PcG protein complex
GO:0035518 IEA histone H2A monoubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001249 pcgf1 polycomb group ring finger 1 protein_coding Danio_rerio
ENSG00000115289 PCGF1 polycomb group ring finger 1 protein_coding Homo_sapiens

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