C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polycomb group ring finger 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165164 Pcgf1-001 ENSMUSG00000069678 10090 + 6:83078346-83080855 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000165164
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000165164 6.413±2.08 3.898±0.60 11.660±1.79 13.555±2.89 4.485±1.08 4.685±0.96 3.740±1.03 6.285±0.77 6.993±5.43 5.418±0.63 2.887±0.77 7.156±3.62 7.470±2.35 14.093±1.27

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0031519 ISS PcG protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233630 PCGF1-001 protein_coding Homo_sapiens 0 1243
ENST00000465993 PCGF1-005 processed_transcript Homo_sapiens 0 361
ENST00000475863 PCGF1-002 retained_intron Homo_sapiens 0 1018
ENST00000480844 PCGF1-003 processed_transcript Homo_sapiens 0 784
ENST00000489914 PCGF1-007 retained_intron Homo_sapiens 2e-37 159
ENST00000496911 PCGF1-004 retained_intron Homo_sapiens 0 368
ENST00000552852 RP11-453D16.1-001 processed_pseudogene Homo_sapiens 0 427
ENST00000612049 PCGF1-201 protein_coding Homo_sapiens 0 985

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